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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039617
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.798s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0633200.1
n.a. CLAVATA3/ESR (CLE)-related protein 1; TAIR: AT1G73165.1 CLAVATA3/ESR-RELATED 1; Swiss-Prot: sp|D1FNJ9|CL4A1_GLORO CLAVATA3/ESR (CLE)-related protein 4A-1; TrEMBL-Plants: tr|A0A151RGI5|A0A151RGI5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0633200 LjG1.1_chr1 118734302 118735645 -
2 domain predictions
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LotjaGi1g1v0633200.2
n.a. CLAVATA3/ESR (CLE)-related protein 1; TAIR: AT1G72390.1 nuclear receptor coactivator; Swiss-Prot: sp|D1FNJ9|CL4A1_GLORO CLAVATA3/ESR (CLE)-related protein 4A-1; TrEMBL-Plants: tr|A0A151RGI5|A0A151RGI5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0633200 LjG1.1_chr1 118734302 118735645 -
2 domain predictions
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LotjaGi3g1v0246500_LC.1
n.a. Clavata3/ESR (CLE) gene family member; TAIR: AT2G31085.1 CLAVATA3/ESR-RELATED 6; Swiss-Prot: sp|Q8S8N3|CLE6_ARATH CLAVATA3/ESR (CLE)-related protein 6; TrEMBL-Plants: tr|V7AH69|V7AH69_PHAVU Rhizobia-induced CLE 2; Found in the gene: LotjaGi3g1v0246500_LC LjG1.1_chr3 40508791 40509596 +
2 domain predictions
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LotjaGi3g1v0449330.1
n.a. Clavata3/ESR (CLE) gene family member; TAIR: AT2G31085.1 CLAVATA3/ESR-RELATED 6; Swiss-Prot: sp|Q8S8N3|CLE6_ARATH CLAVATA3/ESR (CLE)-related protein 6; TrEMBL-Plants: tr|E9L560|E9L560_SOYBN CLE14 protein; Found in the gene: LotjaGi3g1v0449330 LjG1.1_chr3 86285726 86285971 +
2 domain predictions
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