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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0633200 |
| Transcript ID | LotjaGi1g1v0633200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CLAVATA3/ESR (CLE)-related protein 1; TAIR: AT1G72390.1 nuclear receptor coactivator; Swiss-Prot: sp|D1FNJ9|CL4A1_GLORO CLAVATA3/ESR (CLE)-related protein 4A-1; TrEMBL-Plants: tr|A0A151RGI5|A0A151RGI5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0633200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118734302..118735645) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAGTAATCAAATTAAGTCAAGAAGACCAAACAGTTATAATGTTAAACTTTGCCTATAAATTATTGGTGTCTCTTA ATGTTTTATTAGCAGAGAGCATAGTGAGTGCTGAGTTCTGATTGTTTCTTAGAGATGAGAAACTCCCAAATGACTTTTCC TACCTCAATCCTTGTACTTGTTATTTTAGCATTGTTCTCAAACAATGTCAAAATTATTCCAACTCTATTTGTTCACGCGA TAATGTTTCATGAAAATGAGCATTCACTTCAGAATCCAATACATAACAATATCTTGCAACCTACCAATATAGATCGTATT ACAAGAGAGAGTCCAGGAGGCCCAGATCCAAGGCATCATCGTTCTTTTCAACCTAGTAATGTTAATCATATTACTAGGGA AAGTCCAGGAGGTCCAGATCCAAGGCACCACCACTCCTTACGACCTAGTAATATTTACCATATTACCAGGGAGAGTCCAG GAGGTCCAGATCCAAGGCACCATCATTCATTTCAACCTAGTAATGTTTATCACATTACTAGGGAAAGTCCAGGAGGTCCA GATCCAAGGCACCATCACTCTTTACAACCTAATAATGTTTATCATATTACTAGAGAGAGTCCAGAAGGTCCAGATCCAAG GCACCATCATTCTTTTCAACCTAGTAATGTTTATCATATTACTAGGGAAAGCCCAGGAGGTCCAGATCCAAGGCACCACC ACTCCTTACGACCTAGTAATGTTTACCATATTACCAGGGAGAGTCCAGGAGGTCCAGATCCAAGGCACCATCATTCATTT CAACCTGGTAATGTTTATCATATTACTAGGGAAAGCCCAGAAGGTCCAGATCCAAGGCACCATCACTCCTTACAACCTAA TAATGTTTATCATATTACTAGGGAGAGTCCAGGAGGTCCAGATCCAAGGCACCATCACTCCTTACAACCTAATTACTAGA TCCAAAGCAAGACAACTATTTACAACAAAATGATGCTAAGCATCATGGAATATCATCTCATTATGGCTAGCATTCCATAC AAAACTATATATGTATTTAAACAATGATGTTATCAAATAAGACTTTAAATAAAAACTTATACTATACTTAAGCTTGTTAA TAATAATCTTTTAAATTTTAACTATTTTATATCTAATAATTAAGTATTTTTGGCTAGATTTCATCAATAAATTTTTTTAT GGCAAGAAATTCTTAGGTCTTATAAGTGCTCCTCATGAAATGTTATAGAAAATGTGTAGGATTAATTAATTAAGATTGCA AGTCAAGTCATAACAAAACTTATAACAAATAAGGTTAAATATGGTTTTTATCCCTAACTTATAC
CDS sequence (LotjaGi1g1v0633200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAACTCCCAAATGACTTTTCCTACCTCAATCCTTGTACTTGTTATTTTAGCATTGTTCTCAAACAATGTCAAAAT TATTCCAACTCTATTTGTTCACGCGATAATGTTTCATGAAAATGAGCATTCACTTCAGAATCCAATACATAACAATATCT TGCAACCTACCAATATAGATCGTATTACAAGAGAGAGTCCAGGAGGCCCAGATCCAAGGCATCATCGTTCTTTTCAACCT AGTAATGTTAATCATATTACTAGGGAAAGTCCAGGAGGTCCAGATCCAAGGCACCATCACTCTTTACAACCTAATAATGT TTATCATATTACTAGAGAGAGTCCAGAAGGTCCAGATCCAAGGCACCATCATTCTTTTCAACCTAGTAATGTTTATCATA TTACTAGGGAAAGCCCAGGAGGTCCAGATCCAAGGCACCATCATTCATTTCAACCTGGTAATGTTTATCATATTACTAGG GAAAGCCCAGAAGGTCCAGATCCAAGGCACCATCACTCCTTACAACCTAATAATGTTTATCATATTACTAGGGAGAGTCC AGGAGGTCCAGATCCAAGGCACCATCACTCCTTACAACCTAATTACTAG
Protein sequence (LotjaGi1g1v0633200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNSQMTFPTSILVLVILALFSNNVKIIPTLFVHAIMFHENEHSLQNPIHNNILQPTNIDRITRESPGGPDPRHHRSFQP SNVNHITRESPGGPDPRHHHSLQPNNVYHITRESPEGPDPRHHHSFQPSNVYHITRESPGGPDPRHHHSFQPGNVYHITR ESPEGPDPRHHHSLQPNNVYHITRESPGGPDPRHHHSLQPNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| Phobius | 28 | 202 | 175 | - | – | |
| PANTHER | 57 | 85 | 29 | 1.1E-26 | ||
| PANTHER | 57 | 85 | 29 | 1.1E-26 | – | |
| MobiDBLite | 60 | 103 | 44 | - | – | |
| PANTHER | 82 | 109 | 28 | 1.1E-26 | – | |
| PANTHER | 82 | 109 | 28 | 1.1E-26 | ||
| MobiDBLite | 132 | 202 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0633200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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