Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR039617 is a CLAVATA3/ESR (CLE)-related protein.
<p>This entry includes CLAVATA3/ESR (CLE)-related proteins 5, 6, 7, 12, 13 and 53. CLE12 and CLE13 control the nodule numbers by interacting with the SUPER NUMERIC NODULES (SUNN)-dependent auto-regulation of nodulation [[cite:PUB00093698], [cite:PUB00093699]].</p> <p>This entry also includes CLE-4A-1 and CLE-4A-3 from Globodera rostochiensis (Golden nematode worm). They mimics host plant CLE extracellular signal peptides that regulate cell fate [[cite:PUB00095222]].</p> <p>The CLE proteins share a C-terminal CLE domain with CLV3, a small secreted polypeptide that is active as a ligand and has a function in shoot apical meristem maintenance [[cite:PUB00089881]]. In general, the CLE-related proteins are C-terminally processed to generate an active CLE peptide [[cite:PUB00078257]]. These small secreted peptide hormones then function in a variety of developmental and physiological processes [[cite:PUB00089882], [cite:PUB00089427]]. CLV3 and other A-type CLE peptides are involved in the suppression of stem cell development in root and shoot development, in contrast to the B-type CLE peptides, CLE41 and CLE44, in the case of Arabidopsis, which are not [[cite:PUB00087055]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | CLAVATA3/ESR (CLE)-related protein 1; TAIR: AT1G73165.1 CLAVATA3/ESR-RELATED 1; Swiss-Prot: sp|D1FNJ9|CL4A1_GLORO CLAVATA3/ESR (CLE)-related protein 4A-1; TrEMBL-Plants: tr|A0A151RGI5|A0A151RGI5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0633200 | 10 | ||
| – | CLAVATA3/ESR (CLE)-related protein 1; TAIR: AT1G72390.1 nuclear receptor coactivator; Swiss-Prot: sp|D1FNJ9|CL4A1_GLORO CLAVATA3/ESR (CLE)-related protein 4A-1; TrEMBL-Plants: tr|A0A151RGI5|A0A151RGI5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0633200 | 10 | ||
| – | Clavata3/ESR (CLE) gene family member; TAIR: AT2G31085.1 CLAVATA3/ESR-RELATED 6; Swiss-Prot: sp|Q8S8N3|CLE6_ARATH CLAVATA3/ESR (CLE)-related protein 6; TrEMBL-Plants: tr|V7AH69|V7AH69_PHAVU Rhizobia-induced CLE 2; Found in the gene: LotjaGi3g1v0246500_LC | 11 | ||
| – | Clavata3/ESR (CLE) gene family member; TAIR: AT2G31085.1 CLAVATA3/ESR-RELATED 6; Swiss-Prot: sp|Q8S8N3|CLE6_ARATH CLAVATA3/ESR (CLE)-related protein 6; TrEMBL-Plants: tr|E9L560|E9L560_SOYBN CLE14 protein; Found in the gene: LotjaGi3g1v0449330 | 8 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |