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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039774
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.478s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0004400_LC.1
n.a. Paired amphipathic helix protein Sin3; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0B2NVG5|A0A0B2NVG5_GLYSO Paired amphipathic helix protein Sin3-like 4; Found in the gene: LotjaGi2g1v0004400_LC LjG1.1_chr2 1691510 1694122 +
2 domain predictions
1 GO term
LotjaGi2g1v0252800.1
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71828990 71845779 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.2
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|V7C1D5|V7C1D5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829677 71845773 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.3
n.a. Paired amphipathic helix protein Sin3; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829960 71841886 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.4
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829960 71842320 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.5
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829960 71844783 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.6
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|A0A0B2PVE5|A0A0B2PVE5_GLYSO Paired amphipathic helix protein Sin3-like 2; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829976 71844803 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.7
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829976 71844803 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.8
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|K7LXD7|K7LXD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829976 71844803 -
2 domain predictions
1 GO term
LotjaGi2g1v0252800.9
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 LjG1.1_chr2 71829976 71844803 -
2 domain predictions
1 GO term
LotjaGi2g1v0312500.1
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 LjG1.1_chr2 78738991 78751968 +
2 domain predictions
1 GO term
LotjaGi2g1v0312500.2
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 LjG1.1_chr2 78738991 78751968 +
2 domain predictions
1 GO term
LotjaGi2g1v0312500.3
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 LjG1.1_chr2 78739193 78751657 +
2 domain predictions
1 GO term
LotjaGi4g1v0176600.1
n.a. Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|K7L9N1|K7L9N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176600 LjG1.1_chr4 35898068 35918204 -
2 domain predictions
1 GO term
LotjaGi6g1v0085300_LC.2
n.a. Paired amphipathic helix protein Sin3; TAIR: AT5G15020.1 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|A0A0L9TEZ6|A0A0L9TEZ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0085300_LC LjG1.1_chr6 16973797 16976871 -
2 domain predictions
1 GO term