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IPR039774 is a Transcriptional regulatory protein Sin3-like.
<p>Proteins in this entry contain N-terminal PAH (paired amphipathic helix) repeats, a histone deacetylase interacting domain, and a Sin3, C-terminal domain. Sin3 proteins have at least three PAH domains (PAH1, PAH2, and PAH3). They are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 [[cite:PUB00015086]]. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin [[cite:PUB00015087]]. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [[cite:PUB00015114]]. The Sin3, C-terminal domain forms interactions with histone deacetylases [[cite:PUB00017120]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Transcription corepressor activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A third class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Paired amphipathic helix protein Sin3; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0B2NVG5|A0A0B2NVG5_GLYSO Paired amphipathic helix protein Sin3-like 4; Found in the gene: LotjaGi2g1v0004400_LC | 10 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|V7C1D5|V7C1D5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix protein Sin3; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 10 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 10 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z6|I1N5Z6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|A0A0B2PVE5|A0A0B2PVE5_GLYSO Paired amphipathic helix protein Sin3-like 2; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|K7LXD7|K7LXD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT5G15020.2 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|I1N5Z7|I1N5Z7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0252800 | 16 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 | 15 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 | 15 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|A0A0S3T2A7|A0A0S3T2A7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312500 | 15 | ||
– | Paired amphipathic helix SIN3-like protein; TAIR: AT1G70060.1 SIN3-like 4; Swiss-Prot: sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4; TrEMBL-Plants: tr|K7L9N1|K7L9N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0176600 | 16 | ||
– | Paired amphipathic helix protein Sin3; TAIR: AT5G15020.1 SIN3-like 2; Swiss-Prot: sp|Q9LFQ3|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2; TrEMBL-Plants: tr|A0A0L9TEZ6|A0A0L9TEZ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0085300_LC | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
PTHR12346:SF24 | PANTHER | 1 | 6.67 |