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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:3.20.20.70
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 363 results. Now displaying 1 of 8 with 50 rows per page. This search has taken 0.077s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0005909.1
n.a. Hydroxymethylglutaryl-CoA lyase [Medicago truncatula] gi|357458801|ref|XP_003599681.1| chr0 2224840 2225452 -
2 domain predictions
1 GO term
Lj0g3v0005919.1
n.a. PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max] gi|356521713|ref|XP_003529496.1| chr0 2225037 2231851 -
2 domain predictions
1 GO term
Lj0g3v0023849.1
n.a. triosephosphate isomerase [Glycine max] gi|77540216|gb|ABA86966.1| chr0 9546413 9550965 -
2 domain predictions
1 GO term
Lj0g3v0058939.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
2 domain predictions
1 GO term
Lj0g3v0058939.2
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
2 domain predictions
1 GO term
Lj0g3v0062759.1
n.a. PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1| chr0 21146844 21151064 -
2 domain predictions
1 GO term
Lj0g3v0066419.1
n.a. PREDICTED: transaldolase-like [Glycine max] gi|356523949|ref|XP_003530596.1| chr0 23388595 23392153 +
2 domain predictions
1 GO term
Lj0g3v0066429.1
n.a. PREDICTED: transaldolase-like [Glycine max] gi|356523949|ref|XP_003530596.1| chr0 23390897 23394091 +
2 domain predictions
1 GO term
Lj0g3v0066429.2
n.a. PREDICTED: transaldolase-like [Glycine max] gi|356523949|ref|XP_003530596.1| chr0 23392521 23394091 +
2 domain predictions
1 GO term
Lj0g3v0074719.1
n.a. PREDICTED: probable nitronate monooxygenase-like [Fragaria vesca subsp]. vesca] gi|470126409|ref|XP_004299180.1| chr0 28239867 28240791 -
2 domain predictions
1 GO term
Lj0g3v0074729.1
n.a. Aldolase-type TIM barrel family protein isoform 1 [Theobroma cacao] gi|508706851|gb|EOX98747.1| chr0 28239975 28240791 -
2 domain predictions
1 GO term
Lj0g3v0075119.1
n.a. PREDICTED: 12-oxophytodienoate reductase 3-like [Glycine max] gi|356547929|ref|XP_003542357.1| chr0 28443800 28446083 -
2 domain predictions
1 GO term
Lj0g3v0088699.1
n.a. Thiamine-phosphate pyrophosphorylase [Medicago truncatula] gi|357445411|ref|XP_003592983.1| chr0 36316476 36318729 +
2 domain predictions
1 GO term
Lj0g3v0100599.1
n.a. PREDICTED: dihydrodipicolinate synthase 2, chloroplastic-like [Glycine max] gi|356505643|ref|XP_003521599.1| chr0 42520709 42521894 -
2 domain predictions
1 GO term
Lj0g3v0120839.1
n.a. PREDICTED: transaldolase-like [Glycine max] gi|356514222|ref|XP_003525805.1| chr0 53755309 53760949 +
2 domain predictions
1 GO term
Lj0g3v0127829.1
n.a. PREDICTED: n-(5'-phosphoribosyl)anthranilate isomerase-like [Glycine max] gi|356568244|ref|XP_003552323.1| chr0 57677302 57679923 +
2 domain predictions
1 GO term
Lj0g3v0129059.1
n.a. PREDICTED: glutamate synthase [NADH] gi|356571346|ref|XP_003553839.1| chr0 58353336 58360590 +
2 domain predictions
1 GO term
Lj0g3v0129059.2
n.a. NADH glutamate synthase precursor [Phaseolus vulgaris] gi|62177687|gb|AAL26865.2|AF314925_1 chr0 58358376 58360590 +
2 domain predictions
1 GO term
Lj0g3v0130329.1
n.a. PREDICTED: alpha-galactosidase-like [Cicer arietinum] gi|502104561|ref|XP_004492578.1| chr0 59074257 59078174 -
2 domain predictions
1 GO term
Lj0g3v0131439.1
n.a. PREDICTED: alpha-xylosidase-like [Glycine max] gi|356526649|ref|XP_003531929.1| chr0 59792840 59796412 -
2 domain predictions
1 GO term
Lj0g3v0133819.1
n.a. 2-nitropropane dioxygenase-like protein [Medicago truncatula] gi|357460979|ref|XP_003600771.1| chr0 61271650 61272092 -
2 domain predictions
1 GO term
Lj0g3v0165759.1
n.a. PREDICTED: tRNA-dihydrouridine(20) synthase [NAD](P)+] gi|502154498|ref|XP_004509720.1| chr0 78703823 78711633 +
2 domain predictions
1 GO term
Lj0g3v0190949.1
n.a. plastidic aldolase [Solanum palustre] gi|27368033|gb|AAN87356.1| chr0 93359703 93362239 +
2 domain predictions
1 GO term
Lj0g3v0208529.1
n.a. PREDICTED: tRNA-dihydrouridine synthase A-like isoform X3 [Cicer arietinum] gi|502127969|ref|XP_004499894.1| chr0 104489888 104493590 +
2 domain predictions
1 GO term
Lj0g3v0208529.2
n.a. PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] gi|356537294|ref|XP_003537164.1| chr0 104489888 104493590 +
2 domain predictions
1 GO term
Lj0g3v0208529.3
n.a. PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max] gi|356537294|ref|XP_003537164.1| chr0 104489888 104493590 +
2 domain predictions
1 GO term
Lj0g3v0278009.1
n.a. PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Glycine max] gi|356504797|ref|XP_003521181.1| chr0 144370621 144376103 -
2 domain predictions
1 GO term
Lj0g3v0289339.1
n.a. Alpha-galactosidase A [Aegilops tauschii] gi|475572237|gb|EMT16456.1| chr0 150288620 150289728 -
2 domain predictions
1 GO term
Lj0g3v0291839.1
n.a. SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|357477103|ref|XP_003608837.1| chr0 151412905 151413070 +
2 domain predictions
1 GO term
Lj0g3v0291859.1
n.a. AKIN gamma [Medicago truncatula] gi|32364482|gb|AAO61674.1| chr0 151413193 151413523 +
2 domain predictions
1 GO term
Lj0g3v0336589.1
n.a. Ketose-bisphosphate aldolase class-II family protein isoform 1 [Theobroma cacao] gi|508774096|gb|EOY21352.1| chr0 176288428 176308607 -
2 domain predictions
1 GO term
Lj0g3v0336589.2
n.a. D-tagatose-1,6-bisphosphate aldolase subunit gatY [Medicago truncatula] gi|357499101|ref|XP_003619839.1| chr0 176288428 176296798 -
2 domain predictions
1 GO term
Lj0g3v0337069.1
n.a. PREDICTED: alpha-galactosidase-like [Glycine max] gi|356533703|ref|XP_003535399.1| chr0 176533797 176535150 +
2 domain predictions
1 GO term
Lj0g3v0350789.1
n.a. PREDICTED: triosephosphate isomerase, cytosolic-like [Cicer arietinum] gi|502081910|ref|XP_004487007.1| chr0 184361796 184365440 -
2 domain predictions
1 GO term
Lj0g3v0355959.1
n.a. PREDICTED: alpha-galactosidase 1-like [Cicer arietinum] gi|502135602|ref|XP_004502389.1| chr0 187507317 187509291 -
2 domain predictions
1 GO term
Lj0g3v0358589.1
n.a. alpha galactosidase precursor [Glycine max] gi|351724789|ref|NP_001235022.1| chr0 188764131 188771475 -
2 domain predictions
1 GO term
Lj0g3v0358589.2
n.a. alpha-galactosidase [Phaseolus vulgaris] gi|927577|gb|AAA73964.1| chr0 188765951 188771475 -
2 domain predictions
1 GO term
Lj0g3v0361829.1
n.a. PREDICTED: alpha-galactosidase-like [Glycine max] gi|356574823|ref|XP_003555544.1| chr0 190673546 190676350 +
2 domain predictions
1 GO term
Lj1g3v0114240.1
n.a. 12-oxophytodienoic acid 10,10-reductase [Astragalus sinicus] gi|238909261|gb|ACR77749.1| chr1 1328979 1330787 +
2 domain predictions
1 GO term
Lj1g3v0115340.1
n.a. PREDICTED: 12-oxophytodienoate reductase 2-like [Glycine max] gi|356497438|ref|XP_003517567.1| chr1 1353000 1354764 -
2 domain predictions
1 GO term
Lj1g3v0115350.1
n.a. 12-oxophytodienoate reductase [Lotus japonicus] gi|283132371|dbj|BAI63591.1| chr1 1356093 1358539 -
2 domain predictions
1 GO term
Lj1g3v0318830.1
n.a. Galactinol-sucrose galactosyltransferase [Medicago truncatula] gi|357461865|ref|XP_003601214.1| chr1 4003336 4004555 -
2 domain predictions
1 GO term
Lj1g3v0318840.1
n.a. RecName: Full=Galactinol--sucrose galactosyltransferase; AltName: Full=Raffinose synthasegi|18181865|emb|CAD20127.2| raffinose synthase [Pisum sativum] gi|75161213|sp|Q8VWN6.1|RFS_PEA chr1 4004550 4005580 -
2 domain predictions
1 GO term
Lj1g3v0682860.1
n.a. PREDICTED: probable galactinol--sucrose galactosyltransferase 2-like [Cicer arietinum] gi|502133675|ref|XP_004501851.1| chr1 8919515 8925203 -
2 domain predictions
1 GO term
Lj1g3v0841410.1
n.a. delta-aminolevulinic acid dehydratase, chloroplastic [Glycine max] gi|351721201|ref|NP_001238737.1| chr1 10901247 10907217 +
2 domain predictions
1 GO term
Lj1g3v0841420.1
n.a. PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic-like [Cucumis sativus] gi|449441790|ref|XP_004138665.1| chr1 10905144 10907490 +
2 domain predictions
1 GO term
Lj1g3v0969940.1
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|449533220|ref|XP_004173574.1| chr1 12291525 12292564 -
2 domain predictions
1 GO term
Lj1g3v0969950.1
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|502078164|ref|XP_004485858.1| chr1 12291701 12298439 -
2 domain predictions
1 GO term
Lj1g3v0969950.2
n.a. PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] gi|356548431|ref|XP_003542605.1| chr1 12291701 12308131 -
2 domain predictions
1 GO term
Lj1g3v1182010.1
n.a. PREDICTED: alpha-galactosidase-like isoform 1 [Glycine max] gi|356516253|ref|XP_003526810.1| chr1 14386521 14393598 +
2 domain predictions
1 GO term