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Lj0g3v0100599.1

Overview

Field Value
Gene ID Lj0g3v0100599
Transcript ID Lj0g3v0100599.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dihydrodipicolinate synthase 2, chloroplastic-like [Glycine max] gi|356505643|ref|XP_003521599.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12128:SF15
19 315 297 3.90E-112 –
PANTHER
PTHR12128
19 315 297 3.90E-112
IPR002220
PIRSF
PIRSF001365
25 312 288 5.10E-90
IPR002220
SMART
SM01130
30 301 272 2.20E-57
IPR002220
Pfam
PF00701
31 299 269 1.60E-71
IPR002220
Gene3D
G3DSA:3.20.20.70
33 301 269 6.40E-57
IPR013785
SUPERFAMILY
SSF51569
33 301 269 1.47E-55 –
PRINTS
PR00146
63 84 22 1.10E-32
IPR002220
PRINTS
PR00146
99 117 19 1.10E-32
IPR002220
PRINTS
PR00146
131 147 17 1.10E-32
IPR002220
PRINTS
PR00146
154 171 18 1.10E-32
IPR002220
ProSitePatterns
PS00666
159 189 31 –
IPR020625

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0100599.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0100599.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.