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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0062759 |
| Transcript ID | Lj0g3v0062759.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: uridine 5'-monophosphate synthase-like [Glycine max] gi|356548887|ref|XP_003542830.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 427 | 427 | 7.10E-238 | – | |
| PANTHER | 1 | 427 | 427 | 7.10E-238 | – | |
| Hamap | 1 | 224 | 224 | 21.507 | ||
| SUPERFAMILY | 3 | 191 | 189 | 7.24E-43 | ||
| Gene3D | 3 | 171 | 169 | 9.00E-54 | ||
| TIGRFAM | 8 | 169 | 162 | 3.40E-43 | ||
| Pfam | 49 | 152 | 104 | 4.10E-09 | ||
| CDD | 59 | 166 | 108 | 3.09E-17 | ||
| Gene3D | 207 | 467 | 261 | 3.70E-101 | ||
| SUPERFAMILY | 210 | 463 | 254 | 7.36E-56 | ||
| Pfam | 236 | 455 | 220 | 9.90E-74 | ||
| SMART | 237 | 455 | 219 | 2.70E-34 | ||
| CDD | 238 | 455 | 218 | 2.24E-49 | – | |
| TIGRFAM | 238 | 456 | 219 | 4.20E-55 | ||
| ProSitePatterns | 293 | 306 | 14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Orotate phosphoribosyltransferase activity | Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate. | ||
| Molecular function | Orotidine-5'-phosphate decarboxylase activity | Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP. | ||
| Biological process | 'de novo' pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. | ||
| Biological process | Pyrimidine nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | 'de novo' UMP biosynthetic process | The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen. |
Expression pattern of Lj0g3v0062759.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0062759.1, powered by CORGI.
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