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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF03004
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 103 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.023s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0077579.1
n.a. Os05g0202500 [Oryza sativa Japonica Group] gi|115462569|ref|NP_001054884.1| chr0 29768866 29773094 +
2 domain predictions
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Lj0g3v0181809.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 88754659 88755926 -
2 domain predictions
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Lj0g3v0205799.2
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102445643 102449750 +
2 domain predictions
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Lj0g3v0205799.3
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102445643 102449750 +
2 domain predictions
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Lj0g3v0205799.4
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102448507 102449750 +
2 domain predictions
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Lj0g3v0222369.1
n.a. TdcA1-ORF2 protein [Medicago truncatula] gi|357453469|ref|XP_003597012.1| chr0 114384695 114392179 +
2 domain predictions
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Lj0g3v0222379.1
n.a. TdcA1-ORF2 protein [Medicago truncatula] gi|357453469|ref|XP_003597012.1| chr0 114394263 114401562 +
2 domain predictions
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Lj0g3v0261539.1
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 135525486 135527475 -
2 domain predictions
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Lj0g3v0261539.2
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 135526329 135527472 -
2 domain predictions
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Lj0g3v0289679.1
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150424826 -
2 domain predictions
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Lj0g3v0289679.2
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150428449 -
2 domain predictions
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Lj0g3v0303389.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 157898155 157903752 +
2 domain predictions
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Lj3g3v0718510.1
n.a. PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1| chr3 7886811 7890695 -
2 domain predictions
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Lj4g3v2644190.1
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
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Lj4g3v2644190.2
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
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Lj4g3v3017370.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr4 40492204 40496229 +
2 domain predictions
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Lj6g3v0635190.3
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr6 6214273 6215750 -
2 domain predictions
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LotjaGi1g1v0034500.1
n.a. En/Spm-like transposon protein; TAIR: AT1G27440.1 Exostosin family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0034500 LjG1.1_chr1 4575786 4577149 -
2 domain predictions
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LotjaGi1g1v0085000.1
n.a. ATP synthase epsilon chain, chloroplastic; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q06SF3|ATPE_STIHE ATP synthase epsilon chain, chloroplastic; TrEMBL-Plants: tr|I3SJY9|I3SJY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0085000 LjG1.1_chr1 12260043 12263965 +
2 domain predictions
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LotjaGi1g1v0214800_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
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LotjaGi1g1v0214800_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
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LotjaGi1g1v0214800_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
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LotjaGi1g1v0214800_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310889 47316039 -
2 domain predictions
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LotjaGi1g1v0286600_LC.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7Z202|CUPC_DICDI Calcium up-regulated protein C; TrEMBL-Plants: tr|I3SL59|I3SL59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0286600_LC LjG1.1_chr1 69525748 69528042 -
2 domain predictions
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LotjaGi1g1v0297100.1
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956391 71965239 +
2 domain predictions
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LotjaGi1g1v0297100.2
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956506 71965013 +
2 domain predictions
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LotjaGi1g1v0297100.3
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956521 71965008 +
2 domain predictions
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LotjaGi1g1v0297100.4
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956557 71965002 +
2 domain predictions
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LotjaGi1g1v0501700.1
n.a. En/Spm-like transposon protein; TAIR: AT3G62260.2 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0501700 LjG1.1_chr1 101841161 101845054 -
2 domain predictions
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LotjaGi1g1v0526000.1
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279499 105284457 -
2 domain predictions
 –
LotjaGi1g1v0526000.2
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279625 105282625 -
2 domain predictions
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LotjaGi1g1v0526000.3
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279672 105283315 -
2 domain predictions
 –
LotjaGi1g1v0577600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71; TrEMBL-Plants: tr|V7C1B5|V7C1B5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0577600_LC LjG1.1_chr1 111702873 111715419 +
2 domain predictions
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LotjaGi1g1v0682300.1
n.a. En/Spm transposon protein-like; TAIR: AT2G24530.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|Q5UPB5|YL035_MIMIV Putative BTB/POZ domain-containing protein L35; TrEMBL-Plants: tr|I3T6I6|I3T6I6_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0682300 LjG1.1_chr1 124968294 124970370 -
2 domain predictions
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LotjaGi2g1v0013200_LC.1
n.a. En/Spm transposon protein-like; TAIR: AT1G21440.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|V7D0K6|V7D0K6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0013200_LC LjG1.1_chr2 4792679 4799999 -
2 domain predictions
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LotjaGi2g1v0054600_LC.1
n.a. Transmembrane-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0054600_LC LjG1.1_chr2 10829886 10834591 -
2 domain predictions
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LotjaGi2g1v0108300.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi2g1v0108300 LjG1.1_chr2 37258722 37262590 -
2 domain predictions
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LotjaGi2g1v0142100_LC.1
n.a. Guanine nucleotide-binding protein subunit beta-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0142100_LC LjG1.1_chr2 51743413 51748552 -
2 domain predictions
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LotjaGi2g1v0154100_LC.1
n.a. 3-dehydroquinate synthase; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|Q96Y96|AROB_SULTO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
2 domain predictions
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LotjaGi2g1v0154100_LC.2
n.a. tRNA modification GTPase MnmE; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|P0A4Z5|AROB_MYCBO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
2 domain predictions
 –
LotjaGi2g1v0207700_LC.1
n.a. En/Spm-like transposon protein, putative; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P46620|NU5C_MAIZE NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic; TrEMBL-Plants: tr|V7C5U2|V7C5U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0207700_LC LjG1.1_chr2 65284633 65285173 -
2 domain predictions
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LotjaGi2g1v0222900_LC.1
n.a. En/Spm-like transposon protein; TAIR: AT2G45720.1 ARM repeat superfamily protein; Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A0B2S4F6|A0A0B2S4F6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0222900_LC LjG1.1_chr2 67893408 67898038 +
2 domain predictions
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LotjaGi2g1v0388300_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
2 domain predictions
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LotjaGi2g1v0388300_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
2 domain predictions
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LotjaGi2g1v0388300_LC.3
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
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LotjaGi2g1v0388300_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88453057 88460224 +
2 domain predictions
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LotjaGi3g1v0050700_LC.1
n.a. En/Spm-like transposon protein; TAIR: AT1G60110.1 Mannose-binding lectin superfamily protein; Swiss-Prot: sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1; TrEMBL-Plants: tr|V7CCP3|V7CCP3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0050700_LC LjG1.1_chr3 5281300 5288100 -
2 domain predictions
 –