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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF04526
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.017s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3188420.1
n.a. Dopamine beta-monooxygenase [Medicago truncatula] gi|357494649|ref|XP_003617613.1| chr2 40970342 40972980 -
2 domain predictions
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Lj2g3v3339020.1
n.a. Auxin-induced in root cultures protein [Medicago truncatula] gi|357495381|ref|XP_003617979.1| chr2 42555028 42556571 -
2 domain predictions
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Lj4g3v0119950.1
n.a. PREDICTED: auxin-induced in root cultures protein 12-like [Glycine max] gi|356532614|ref|XP_003534866.1| chr4 1146242 1148775 +
2 domain predictions
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Lj4g3v0282220.1
n.a. Auxin-induced in root cultures protein [Medicago truncatula] gi|357504947|ref|XP_003622762.1| chr4 3379093 3381452 +
2 domain predictions
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Lj6g3v0775970.1
n.a. Auxin-responsive family protein [Theobroma cacao] gi|508781646|gb|EOY28902.1| chr6 7384494 7385940 +
2 domain predictions
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Lj6g3v1753190.1
n.a. PREDICTED: auxin-induced in root cultures protein 12-like [Cicer arietinum] gi|502079337|ref|XP_004486229.1| chr6 19747566 19748352 +
2 domain predictions
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Lj6g3v1753240.1
n.a. PREDICTED: auxin-induced in root cultures protein 12-like [Glycine max] gi|356532614|ref|XP_003534866.1| chr6 19766773 19768488 +
2 domain predictions
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LotjaGi1g1v0007600.1
n.a. Cytochrome b561 and domon domain-containing protein; TAIR: AT2G04850.1 Auxin-responsive family protein; Swiss-Prot: sp|Q9SJ74|B561G_ARATH Cytochrome b561 and DOMON domain-containing protein At2g04850; TrEMBL-Plants: tr|I3S8L2|I3S8L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007600 LjG1.1_chr1 1038479 1040344 +
2 domain predictions
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LotjaGi1g1v0026100.1
n.a. Cytochrome b561 and domon domain-containing protein; TAIR: AT4G12980.1 Auxin-responsive family protein; Swiss-Prot: sp|Q9SV71|B561O_ARATH Cytochrome b561 and DOMON domain-containing protein At4g12980; TrEMBL-Plants: tr|A0A151U2B5|A0A151U2B5_CAJCA Ferric-chelate reductase 1; Found in the gene: LotjaGi1g1v0026100 LjG1.1_chr1 3164506 3167301 +
2 domain predictions
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LotjaGi1g1v0593800.1
n.a. Cytochrome b561 and DOMON domain-containing protein; TAIR: AT3G25290.1 Auxin-responsive family protein; Swiss-Prot: sp|Q9LSE7|B561C_ARATH Cytochrome b561 and DOMON domain-containing protein At3g25290; TrEMBL-Plants: tr|I1N1W5|I1N1W5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0593800 LjG1.1_chr1 113380474 113382975 +
2 domain predictions
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LotjaGi4g1v0008100.1
n.a. Cytochrome b561 and DOMON domain-containing protein; TAIR: AT5G47530.1 Auxin-responsive family protein; Swiss-Prot: sp|Q9FGK4|B561J_ARATH Cytochrome b561 and DOMON domain-containing protein At5g47530; TrEMBL-Plants: tr|A0A151SU37|A0A151SU37_CAJCA Auxin-induced in root cultures protein 12; Found in the gene: LotjaGi4g1v0008100 LjG1.1_chr4 1111660 1118175 +
2 domain predictions
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LotjaGi5g1v0211100.1
n.a. Auxin-induced in root cultures protein 12; TAIR: AT3G07390.1 auxin-induced in root cultures-like protein; Swiss-Prot: sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12; TrEMBL-Plants: tr|G7LEE2|G7LEE2_MEDTR Auxin-induced in root cultures protein, putative; Found in the gene: LotjaGi5g1v0211100 LjG1.1_chr5 51534361 51535622 -
2 domain predictions
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LotjaGi6g1v0285800_LC.1
n.a. Auxin-induced in root cultures protein 12; TAIR: AT5G47530.1 Auxin-responsive family protein; Swiss-Prot: sp|Q9FGK4|B561J_ARATH Cytochrome b561 and DOMON domain-containing protein At5g47530; TrEMBL-Plants: tr|A0A0L9VE43|A0A0L9VE43_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285800_LC LjG1.1_chr6 60311799 60312651 +
2 domain predictions
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LotjaGi6g1v0285900.1
n.a. Cytochrome b561 and domon domain-containing protein; TAIR: AT4G17280.1 Auxin-responsive family protein; Swiss-Prot: sp|Q8VYH6|B651B_ARATH Cytochrome b561 and DOMON domain-containing protein At4g17280; TrEMBL-Plants: tr|I1L009|I1L009_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0285900 LjG1.1_chr6 60338465 60341214 +
2 domain predictions
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