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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0211100 |
| Transcript ID | LotjaGi5g1v0211100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-induced in root cultures protein 12; TAIR: AT3G07390.1 auxin-induced in root cultures-like protein; Swiss-Prot: sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12; TrEMBL-Plants: tr|G7LEE2|G7LEE2_MEDTR Auxin-induced in root cultures protein, putative; Found in the gene: LotjaGi5g1v0211100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51534361..51535622) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAAATGCATGCTACTTTCCATAAGTTAAGAAAACCCATTTATAATTTGATAGCCATGTGATGTATCTTTTGAAACAA AACGTGCGTTTGATGCAAATTAGCTGTATTTTTACAATATCTATTCTACCCTTAACAAGTTTGGCTTAAGTACAAGTACA AGCACTTCAGTTTCACTCTCTCACTGTCATCAACAATGGCATCTTCCATTTCTCTACCCTCTTCAACCCTTATCTTCGCA ATCTCCATTTCGATCTTCATCTCTCTCTTCTCACCCACTCATTCCGCCATCAACTGCGCCACCCAGAAGCTCCCATCGGG CCGCAACTACGCCAGCTGCACCAATCTCTCCTCCCTCGGCGCCACCCTCCATTTCACCTACAACGAAACCAACAGCTCCA TCGCCGTCGCCTTCTCCGCTGCGCCGCCGAAGGGCGGCTGGGTCGCATGGGGTCTCAACCTCGCCGGCGGCGGCATGGCT GGTACTCAGGCCCTCGTCGCCTACAAGGGTGGCGACAAGAACGTTGTCGGGGTCCACCTCTACAACATCACCTCCTACTC TGAACTCGCCGAGGTCAAGAGCTTCTCCTTTGAGACGTGGGACCTCTCCGCCGAGGAGTCCTCCGCCGCTATCACGATCT TCGCCGCGGTGAAGGTGCCGGAGAACGCGGACAACATCAGTCAGATCTGGCAGGTGGGCCCCGTTGTGTCCGGGAAGATA AACAAGCACGACTTCAAACCGGAGAACCTTGCGGCCAAGGCGCCGCTGTCGGTGGTGGCCACGACAGCAGTGGTTGGAGG TGGAAACACTACCAGTGGGAGTGGGAACACCACTACTTCTGGCCAGAAGGGTGGTGGGGTCCATGTGATGGGTGAGAGAT TTGGACTGGGATTTTACCTAGGGGTGGTTTTGGTTATCATGAGTTTTCTCACCATGTGATTCTGACTTTTATTTTTTCAC CTTTGAATAATTATTCTTATCCTAGCTTTGTGGATCTGAGGATCTCTCAACTTTTATTCTAGTAGTTTACTTTTTATTTT GTGTTCTTTATCTTTTGTGACTTGGTTAGATGATTTGTAATTTTGAGCTTTTAGAATCCAGAATAAGTATTCTTATTAAA AAAAAACCGAATTGAACCAATTACGAACATCCAAACTGAACCGAACTGAACTGGTGTCTTGGTTTATTTAACGGTTTTGA ACCGGTTCAATTCTCGAACCATAAAATTGATTCTAAACCCGACTTAAATTATAAAATCAGTT
CDS sequence (LotjaGi5g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTCCATTTCTCTACCCTCTTCAACCCTTATCTTCGCAATCTCCATTTCGATCTTCATCTCTCTCTTCTCACC CACTCATTCCGCCATCAACTGCGCCACCCAGAAGCTCCCATCGGGCCGCAACTACGCCAGCTGCACCAATCTCTCCTCCC TCGGCGCCACCCTCCATTTCACCTACAACGAAACCAACAGCTCCATCGCCGTCGCCTTCTCCGCTGCGCCGCCGAAGGGC GGCTGGGTCGCATGGGGTCTCAACCTCGCCGGCGGCGGCATGGCTGGTACTCAGGCCCTCGTCGCCTACAAGGGTGGCGA CAAGAACGTTGTCGGGGTCCACCTCTACAACATCACCTCCTACTCTGAACTCGCCGAGGTCAAGAGCTTCTCCTTTGAGA CGTGGGACCTCTCCGCCGAGGAGTCCTCCGCCGCTATCACGATCTTCGCCGCGGTGAAGGTGCCGGAGAACGCGGACAAC ATCAGTCAGATCTGGCAGGTGGGCCCCGTTGTGTCCGGGAAGATAAACAAGCACGACTTCAAACCGGAGAACCTTGCGGC CAAGGCGCCGCTGTCGGTGGTGGCCACGACAGCAGTGGTTGGAGGTGGAAACACTACCAGTGGGAGTGGGAACACCACTA CTTCTGGCCAGAAGGGTGGTGGGGTCCATGTGATGGGTGAGAGATTTGGACTGGGATTTTACCTAGGGGTGGTTTTGGTT ATCATGAGTTTTCTCACCATGTGA
Protein sequence (LotjaGi5g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSISLPSSTLIFAISISIFISLFSPTHSAINCATQKLPSGRNYASCTNLSSLGATLHFTYNETNSSIAVAFSAAPPKG GWVAWGLNLAGGGMAGTQALVAYKGGDKNVVGVHLYNITSYSELAEVKSFSFETWDLSAEESSAAITIFAAVKVPENADN ISQIWQVGPVVSGKINKHDFKPENLAAKAPLSVVATTAVVGGGNTTSGSGNTTTSGQKGGGVHVMGERFGLGFYLGVVLV IMSFLTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 10 | 231 | 222 | 1.1E-65 | – | |
| PANTHER | 10 | 231 | 222 | 1.1E-65 | – | |
| Phobius | 12 | 25 | 14 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 228 | 198 | - | – | |
| CDD | 45 | 189 | 145 | 4.7545E-60 | – | |
| ProSiteProfiles | 54 | 168 | 115 | 14.366 | ||
| Pfam | 94 | 191 | 98 | 2.0E-24 | ||
| TMHMM | 229 | 246 | 18 | - | – | |
| Phobius | 229 | 246 | 18 | - | – | |
| Phobius | 247 | 247 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0211100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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