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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF06549
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.013s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0102409.1
n.a. Similar to gb|D86180 phosphoribosylanthranilate transferase from Pisum sativum and contains 2 PF|00168 C2 (phospholipid binding) domains. ESTs gb|H76726, gb|T45544 and gb|N96377 come from this gene [Arabidopsis thaliana] gi|5882720|gb|AAD55273.1|AC008263_4 chr0 43564372 43565221 -
2 domain predictions
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Lj1g3v0558030.1
n.a. Wiskott-Aldrich syndrome protein family member 2 [Theobroma cacao] gi|508774829|gb|EOY22085.1| chr1 6736614 6738486 +
2 domain predictions
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LotjaGi1g1v0213000.1
n.a. wiskott-aldrich syndrome family protein, putative (DUF1118); TAIR: AT5G08050.1 wiskott-aldrich syndrome family protein, putative (DUF1118); Swiss-Prot: sp|P0DOA0|CCKA_BRUA2 Sensor kinase CckA; TrEMBL-Plants: tr|I3SG02|I3SG02_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0213000 LjG1.1_chr1 46983357 46986143 -
2 domain predictions
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LotjaGi1g1v0215000.1
n.a. transmembrane protein, putative (DUF1118); TAIR: AT1G74730.1 transmembrane protein, putative (DUF1118); Swiss-Prot: sp|Q5UPL0|YL137_MIMIV Uncharacterized protein L137; TrEMBL-Plants: tr|A5C347|A5C347_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0215000 LjG1.1_chr1 47427341 47428799 -
2 domain predictions
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