Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0213000 |
| Transcript ID | LotjaGi1g1v0213000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | wiskott-aldrich syndrome family protein, putative (DUF1118); TAIR: AT5G08050.1 wiskott-aldrich syndrome family protein, putative (DUF1118); Swiss-Prot: sp|P0DOA0|CCKA_BRUA2 Sensor kinase CckA; TrEMBL-Plants: tr|I3SG02|I3SG02_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0213000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46983357..46986143) extracted from Lotus japonicus Gifu genome v1.2.
TATACTCGTGGCTTAGAAGGAGGCACAGAACATAGCACCAACCGCTTTATGGCACGTGGACATCAAAAGAGTGAAATACC AATCCATGTAATACATGGCCGTTATCATCAGTATCATCTTCCCTTCCTCCATTGTCTATGAGACTCTCTCTGTTCATCAA AGCTTAGTGATAAGAGGAAAGATAGAAAGAAAATAAGAAGCTTTTGGTTGTTATGGAGGTTTCAGCATCAACCATTTGCA GAGGATCCCCATTTATGTGCTATGCTCCTGCTACAACAAAAAATTCTGCTACTTTCTCACCTTTTCTTGTCAAATCCATG GCTACTCCGAAGCCCCCTCCTTCAGTGACTAAAAAGGTTAGTGCATTGCTAGCGATTTCTTTTAATTGTATTAATATAGA TAGTTATAGATGAGAAAGATGCAATAATTTGATATATATGGTATTGGTAGCTTTTTTTGTTTTGCCTAGAATGACTCATG TTAGCTATTATCTTTTTGCTTTAAATTTTAGTTTCTTGTATTAATTGTATATGTTGCATCATAATGGTTAATCTTTAGAC ATTATTCATGATTAGAGATTATGGGGTTGTTTAATTCATTGACCCAATCTGATCTAGTGGGAAAAGACTTTAGTTGTGTG ATTGTTTGTACTCTCTATAATTTTGAAAAATTGGTGTATGCGTGAGTACTTTGGTCTCTGAAAGATTTTGGGTCCGGTAG TTTAGTTCTTGAGAGATGAAAATCACTTTTTTGTTAAGTTCATTCAATTTGCGCATTTTCAGTGACTAATTGTAAAACGA CTCAATTGATGGCTTTTTTCATCTTTGAGGGCAAAAATAATTTTTCAGAGACTAAATTGCTCAACCTGATATCTTTCAGA GTGTTAGAGTCCCACATTGGCTAGAGATGTGGTCAAGCAATTGCTTATATATGGCTCTTGAGCTAGCTTTTGGGTTAAGT TAGGTCTCCTTCATGGTATCAGAGCCAATGGTTGATTGACCATGGGCCTGGGCCCTATCCTAGATCCATTTGTTGACTCC CCATATTTGGGTCACCCGTTTCATTCCACGCTCCAGATGTTCTACACTGGGCGTGAGGGGGTGTGTTAGAGTCCCACATT GGCTAGAGATGTGGTCAAGCAATTGCTTATATATGGTTGTGCAAACCTTAACTCTTGAGCTAGCTTTTGGGTTAAGTTAG GCCTCCTTCACAGAGGCCAAAATGATAGTATACTCTTTCTGTATTCTTGTGTTAATTAGTGTCATTAGTATATGTGTGGT TTCTAGTTCTAAATTTCTAATTTTTAGACCACTAGAAGAAAGAATGAAAGAGAGAAAATGCTCTGATCTGCTGTGAATTT ATACGTGTTCAGGACCCGTTTTGGTGAAAGCATTGTTTTTGTAATGGCCATTACCTCTTTGAAATGTAGCAGGCCTTCTT CATATAAGTTTTCAGCATGTGTAACCAGATTTGTAGCATGTTTAGAAATCCTTCTAGAATTGACTCTATAACCAAAATGA ATTCTACCGAGAAGCTTCTGTTAATAGCTTCTGCGTGCAGCTGGAATTGATTTCCAGAAAAAATAAGTTAACCCAAATAT GCTATGAATGGCACAGCATGATGTGAATGGTAAAACATGTCTTTGTGATGTCAAACATTTTCTTACAATTCCTGAATCAT TTGCAAAAATGCAGAATTCAGGTACAGCCCCCATAAAACTTCTCACAAGAATGGAGCAGCTGAAACTGCTGAGCAAAGCA GAGAAAGCAGGGCTGTTATCCGCAGCGGAGAAGTCCGGACTCTCCCTCTCAACAATAGAGAAACTGGGACTCCTCTCAAA AGCAGAAGAGCTGGGTGTGTTATCCGCCGCTACTGATCCCGGAACTCCGGGATCACTCTTAACCCTCAGCTTGGGCTTGC TCCTCCTGGGACCCTTGTTTGTTTACCTGGTGCCTGAGGATAACCTCGGCGAGGTGGGATTGCAAGTTGTAGTTGCCTTG CTCTCTGTAGTTGGTGGTTCTGCTGGTTTTGCTGCATCAAGTTTTGTATCCAACCTGCAGAAATCAAATTAAATTTGATG ACCTTTTGTTTTTTTGCTACTTTGACTCAGCATGTTTGTTCTTCATTGTGCTTCATCTGTTATGAAGTTGTTTATTTGTG CTAAAACACACATAAATAAGTGAACGCCCCAAATGGTTAGAAATTATAACATGTAACAATCTAAGTGTCTCTACTCAGTA GGTTAAACTTTTGGATTAATGTGTTCATTAAAAGATCTGGTGCTATTATTAAGCTGGTTGGATTTGAAAAGTTCAAATTT GTTGGTGGAGAATTCCAATTGTTTAAATTTTAGAAAGGATGGAGGATTTGGTTGTTGCGACGGAAAAGGGAAGATATCTA CGACAAATTGAACATGATAGGAGTTGTACAATTTTCCATTCTTGAGATTGTAGTCCATCCCCAACAAACGAATTGCTGTT CCTATCTCTTTCTTCTTTTCCTATAAAATTGCCTATCATATCTCTCATTTTTGTCTTTTCTATTCCCTTATCTCTTTGGA TGTCAGTAGATTATGAAGTTTTTTACCAGTTACACCAGATTATTGGAGGTGGATACAGTGTCAGCAGCAGGGATGAAGAA GAGGAATGAATCATGAGTTAGTTAGTAGAAACTGTTAGAAGACAGTCATTTGTAGTTGTACAGTTTGTTGAGACTTGAGA GTAATCACAGTTCTGATGTGTTAGTTGTATGCTAATTGTACAAATGAACTATAGTTACTATAGCTGG
CDS sequence (LotjaGi1g1v0213000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTCAGCATCAACCATTTGCAGAGGATCCCCATTTATGTGCTATGCTCCTGCTACAACAAAAAATTCTGCTAC TTTCTCACCTTTTCTTGTCAAATCCATGGCTACTCCGAAGCCCCCTCCTTCAGTGACTAAAAAGAATTCAGGTACAGCCC CCATAAAACTTCTCACAAGAATGGAGCAGCTGAAACTGCTGAGCAAAGCAGAGAAAGCAGGGCTGTTATCCGCAGCGGAG AAGTCCGGACTCTCCCTCTCAACAATAGAGAAACTGGGACTCCTCTCAAAAGCAGAAGAGCTGGGTGTGTTATCCGCCGC TACTGATCCCGGAACTCCGGGATCACTCTTAACCCTCAGCTTGGGCTTGCTCCTCCTGGGACCCTTGTTTGTTTACCTGG TGCCTGAGGATAACCTCGGCGAGGTGGGATTGCAAGTTGTAGTTGCCTTGCTCTCTGTAGTTGGTGGTTCTGCTGGTTTT GCTGCATCAAGTTTTGTATCCAACCTGCAGAAATCAAATTAA
Protein sequence (LotjaGi1g1v0213000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSASTICRGSPFMCYAPATTKNSATFSPFLVKSMATPKPPPSVTKKNSGTAPIKLLTRMEQLKLLSKAEKAGLLSAAE KSGLSLSTIEKLGLLSKAEELGVLSAATDPGTPGSLLTLSLGLLLLGPLFVYLVPEDNLGEVGLQVVVALLSVVGGSAGF AASSFVSNLQKSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 115 | 115 | - | – | |
| Pfam | 60 | 172 | 113 | 4.0E-46 | ||
| TMHMM | 115 | 134 | 20 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 145 | 11 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 146 | 166 | 21 | - | – | |
| Phobius | 167 | 173 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0213000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…