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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0215000 |
| Transcript ID | LotjaGi1g1v0215000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1118); TAIR: AT1G74730.1 transmembrane protein, putative (DUF1118); Swiss-Prot: sp|Q5UPL0|YL137_MIMIV Uncharacterized protein L137; TrEMBL-Plants: tr|A5C347|A5C347_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0215000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47427341..47428799) extracted from Lotus japonicus Gifu genome v1.2.
GCTAGGGCCAATATGATTGGTGGAAATCAAGCAACGAAAGATAGCCTAGCCTCACTCTTTTCATTTTTTTGGTTGGTATA GCCTCACTCTAAACCAGACGAATATTACTAATATTATAATTTCACCCAAAAAAGTGTCCCTTTGAGTCTCTCTTCCCTCG TCGTCTCACGTGGCAGTTGCGATACCACTGATAAGTCTGCGGTTCCTACACCACCCCATCCATGGCGGTCTCAGCACCAC CGTCAGCTACCGGTCTCCGACTCCGATGCATCAACACCTTCTCTCCCTCACTCCGTCCTCACCGCTCATTCCCCACTCCC TCCTCCAACAAATCTCTAACCGTCATCGCAATGGCTCCCAAAAAGAAGGTACATCACAAAAACAGCCCAATCTGACTTAA TTTTTCCTTTAAGACTAATCCCTCGAAACTCGGAGACTACGTTAAGTGAGTCTCGACAAATGCTTCTACGCATCGTCCCC GTTATACTAAATTCTTAAGGAGCTCACGTTATATTTATTGATTATTTTCATTTAATTTCTTTTCTACTGACGCAAAAATT AGCAATTGATTGAGCTGATTTCCTTGTGCAAGGTGAACAAGTACGACGGTAACTGGAAGAAGGAGTGGTTCGGCGCCGGG ATCTTCTACGAGGGAAGCGAGCAGGTGGACGTCGACGTGTTCAAGAAGCTGGAGAAGAGTAAGGTGCTGAGCACCGTCGA GAGAGCAGGGCTGCTGTCCAAAGCGGAGGAGTTGGGGGTCACGCTTTCTTCGATCGAGAAGCTCGGTTTGTTTTCCAAGG CGGAGGAGCTCGGGTTGCTGAGTTTGTTGGAGAGTGCCGCTGGCTTTTCCCCCTCAGTGTTGGCGTCGGCGTCGATCCCG GCGCTTGTGGCTGCCCTTGCGGCGGTCGTCCTCATTCCAGATGACTCAGCTGGGCTCGTGGTCGTCCAGGACGTCGTCGC TGCCGTGTTCGGCGTCGGGGCTGTCGGGTTGTTAGTTGGGTCTGTTGTTCTAGGCGGATTGCAAGAGGCTGATTAGTTGA ATTGAATTGAAGAACATTAGGTGGATTAATTTTTGTTTTTTGTTTTTTTTCCTCTTTTAGTTTTTGAATTGAGGCCATCG CTTTAACTTTATAGTGTAAAAAAAATAAATTACTGAAACTGAAAGTGGGAACATACAAGGTTTCTTTATGGAGGGCTCTA GCCTCTAAGGTGCACTATTAGTTTTTTTTTTTCTTTTTGATAAGCAAAGAAGATATATTGATAACCCATATACAAAGAGG GGAAAAGAAAAGCAAATTACATAAAATAAAAGATATTATCCCCCACTTTAATATCAAAGGACACAGTGAATTATAAATCA GAAACGGTTGTAGCCCCCCATCCACCCATCAGCAATGAGAAAACATGAAAATGATAAATAATGGCTACTAGACACAGAAC CTTCAAAAGAAATAACCCA
CDS sequence (LotjaGi1g1v0215000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTCTCAGCACCACCGTCAGCTACCGGTCTCCGACTCCGATGCATCAACACCTTCTCTCCCTCACTCCGTCCTCA CCGCTCATTCCCCACTCCCTCCTCCAACAAATCTCTAACCGTCATCGCAATGGCTCCCAAAAAGAAGGTGAACAAGTACG ACGGTAACTGGAAGAAGGAGTGGTTCGGCGCCGGGATCTTCTACGAGGGAAGCGAGCAGGTGGACGTCGACGTGTTCAAG AAGCTGGAGAAGAGTAAGGTGCTGAGCACCGTCGAGAGAGCAGGGCTGCTGTCCAAAGCGGAGGAGTTGGGGGTCACGCT TTCTTCGATCGAGAAGCTCGGTTTGTTTTCCAAGGCGGAGGAGCTCGGGTTGCTGAGTTTGTTGGAGAGTGCCGCTGGCT TTTCCCCCTCAGTGTTGGCGTCGGCGTCGATCCCGGCGCTTGTGGCTGCCCTTGCGGCGGTCGTCCTCATTCCAGATGAC TCAGCTGGGCTCGTGGTCGTCCAGGACGTCGTCGCTGCCGTGTTCGGCGTCGGGGCTGTCGGGTTGTTAGTTGGGTCTGT TGTTCTAGGCGGATTGCAAGAGGCTGATTAG
Protein sequence (LotjaGi1g1v0215000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSAPPSATGLRLRCINTFSPSLRPHRSFPTPSSNKSLTVIAMAPKKKVNKYDGNWKKEWFGAGIFYEGSEQVDVDVFK KLEKSKVLSTVERAGLLSKAEELGVTLSSIEKLGLFSKAEELGLLSLLESAAGFSPSVLASASIPALVAALAAVVLIPDD SAGLVVVQDVVAAVFGVGAVGLLVGSVVLGGLQEAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 137 | 137 | - | – | |
| Pfam | 81 | 195 | 115 | 3.7E-45 | ||
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 138 | 158 | 21 | - | – | |
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 192 | 23 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 193 | 196 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0215000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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