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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF12697
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 97 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.042s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0043829.1
n.a. PREDICTED: polyneuridine-aldehyde esterase-like [Glycine max] gi|356520748|ref|XP_003529022.1| chr0 14407815 14413503 -
2 domain predictions
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Lj0g3v0089829.1
n.a. PREDICTED: haloalkane dehalogenase-like isoform X1 [Cicer arietinum] gi|502147891|ref|XP_004506956.1| chr0 36928509 36932780 -
2 domain predictions
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Lj0g3v0131869.1
n.a. Monoacylglycerol lipase ABHD6 [Medicago truncatula] gi|357463311|ref|XP_003601937.1| chr0 60095504 60099075 -
2 domain predictions
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Lj0g3v0214529.1
n.a. Methyl jasmonate esterase [Medicago truncatula] gi|357512899|ref|XP_003626738.1| chr0 108716671 108720282 -
2 domain predictions
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Lj0g3v0259659.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 2 [Theobroma cacao] gi|508786211|gb|EOY33467.1| chr0 134949757 134952420 -
2 domain predictions
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Lj0g3v0268549.1
n.a. Alpha/beta hydrolase-fold family protein [Medicago truncatula] gi|357458507|ref|XP_003599534.1| chr0 139026416 139028857 -
2 domain predictions
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Lj0g3v0360289.1
n.a. DNA photolyase [Arabidopsis thaliana] gi|240256063|ref|NP_194259.4| chr0 189721849 189726685 +
2 domain predictions
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Lj0g3v0360289.2
n.a. DNA photolyase [Arabidopsis thaliana] gi|240256063|ref|NP_194259.4| chr0 189721992 189726685 +
2 domain predictions
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Lj0g3v0360289.3
n.a. DNA photolyase [Arabidopsis thaliana] gi|240256063|ref|NP_194259.4| chr0 189722007 189726685 +
2 domain predictions
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Lj1g3v0683890.1
n.a. PREDICTED: abhydrolase domain-containing protein 11-like [Glycine max] gi|356505392|ref|XP_003521475.1| chr1 8929661 8932694 +
2 domain predictions
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Lj1g3v1112830.1
n.a. PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase-like [Glycine max] gi|356516204|ref|XP_003526786.1| chr1 13913771 13918977 -
2 domain predictions
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Lj1g3v1788330.1
n.a. PREDICTED: monoacylglycerol lipase ABHD6-like [Cicer arietinum] gi|502132566|ref|XP_004501423.1| chr1 21458502 21460463 -
2 domain predictions
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Lj1g3v3027220.1
n.a. PREDICTED: probable esterase At1g33990-like [Glycine max] gi|356568777|ref|XP_003552586.1| chr1 34666597 34671242 +
2 domain predictions
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Lj1g3v3313170.1
n.a. Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gi|508712283|gb|EOY04180.1| chr1 37022393 37026640 -
2 domain predictions
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Lj1g3v4579110.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao] gi|508715864|gb|EOY07761.1| chr1 54476249 54481114 +
2 domain predictions
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Lj1g3v4579110.2
n.a. Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao] gi|508715864|gb|EOY07761.1| chr1 54477789 54481114 +
2 domain predictions
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Lj1g3v4955440.1
n.a. PREDICTED: acyltransferase-like protein At1g54570, chloroplastic-like [Cicer arietinum] gi|502113476|ref|XP_004494663.1| chr1 60356215 60364303 -
2 domain predictions
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Lj2g3v1252770.1
n.a. 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Medicago truncatula] gi|357487589|ref|XP_003614082.1| chr2 19953116 19958149 +
2 domain predictions
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Lj2g3v1829910.2
n.a. PREDICTED: methylesterase 3-like [Cicer arietinum] gi|502160983|ref|XP_004511978.1| chr2 27645525 27646736 +
2 domain predictions
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Lj2g3v2103060.1
n.a. Calcium-dependent protein kinase [Medicago truncatula] gi|357481303|ref|XP_003610937.1| chr2 31797618 31804585 -
2 domain predictions
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Lj2g3v2124220.1
n.a. PREDICTED: protein phosphatase methylesterase 1-like [Glycine max] gi|356538962|ref|XP_003537969.1| chr2 31872772 31879916 -
2 domain predictions
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Lj3g3v0116140.2
n.a. Epoxide hydrolase [Medicago truncatula] gi|357455099|ref|XP_003597830.1| chr3 883967 888818 -
2 domain predictions
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Lj3g3v1170210.1
n.a. Alpha/beta-hydrolases family protein isoform 2 [Theobroma cacao] gi|508786204|gb|EOY33460.1| chr3 15670739 15673165 -
2 domain predictions
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Lj3g3v1981290.1
n.a. PREDICTED: probable esterase At1g33990-like [Glycine max] gi|356509495|ref|XP_003523483.1| chr3 25488364 25493327 -
2 domain predictions
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Lj3g3v2236800.1
n.a. Epoxide hydrolase [Medicago truncatula] gi|357455099|ref|XP_003597830.1| chr3 27526613 27531649 -
2 domain predictions
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Lj3g3v3654520.1
n.a. PREDICTED: protein PHYLLO, chloroplastic-like [Cicer arietinum] gi|502154072|ref|XP_004509573.1| chr3 44606864 44621283 +
2 domain predictions
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Lj4g3v0972360.1
n.a. Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gi|508699152|gb|EOX91048.1| chr4 14145801 14150460 -
2 domain predictions
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Lj4g3v1632010.1
n.a. Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gi|508774581|gb|EOY21837.1| chr4 23941158 23943824 -
2 domain predictions
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Lj4g3v2309260.1
n.a. PREDICTED: epoxide hydrolase 2-like [Glycine max] gi|356564247|ref|XP_003550367.1| chr4 32113408 32115100 +
2 domain predictions
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Lj5g3v0310140.4
n.a. Sigma factor sigB regulation protein rsbQ [Medicago truncatula] gi|357437621|ref|XP_003589086.1| chr5 3102036 3104114 -
2 domain predictions
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Lj5g3v0769540.1
n.a. esterase/lipase superfamily protein [Prunus armeniaca] gi|302746501|gb|ADL62861.1| chr5 11213742 11231950 +
2 domain predictions
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Lj5g3v0769540.3
n.a. esterase/lipase superfamily protein [Prunus armeniaca] gi|302746501|gb|ADL62861.1| chr5 11225541 11231950 +
2 domain predictions
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Lj5g3v0877170.2
n.a. PREDICTED: monoacylglycerol lipase ABHD6-like [Glycine max] gi|356550775|ref|XP_003543759.1| chr5 12987187 12990489 -
2 domain predictions
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LotjaGi1g1v0130900.1
n.a. Methyl esterase 17; TAIR: AT3G10870.1 methyl esterase 17; Swiss-Prot: sp|Q9SG92|MES17_ARATH Methylesterase 17; TrEMBL-Plants: tr|I3STD8|I3STD8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0130900 LjG1.1_chr1 21023291 21027505 -
2 domain predictions
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LotjaGi1g1v0144300.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT1G78210.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P23133|TODF_PSEP1 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase; TrEMBL-Plants: tr|A0A151TZS1|A0A151TZS1_CAJCA 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase; Found in the gene: LotjaGi1g1v0144300 LjG1.1_chr1 23999201 24002403 -
2 domain predictions
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LotjaGi1g1v0303800.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT3G10840.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|A6TAC7|MHPC_KLEP7 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase; TrEMBL-Plants: tr|A0A1J7H8Y8|A0A1J7H8Y8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0303800 LjG1.1_chr1 74132118 74143145 -
2 domain predictions
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LotjaGi1g1v0305000.1
n.a. Methyl esterase 17; TAIR: AT3G10870.1 methyl esterase 17; Swiss-Prot: sp|Q9SG92|MES17_ARATH Methylesterase 17; TrEMBL-Plants: tr|I1KB59|I1KB59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305000 LjG1.1_chr1 74391551 74397676 -
2 domain predictions
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LotjaGi1g1v0305000.3
n.a. Methyl esterase 17; TAIR: AT3G10870.1 methyl esterase 17; Swiss-Prot: sp|Q9SG92|MES17_ARATH Methylesterase 17; TrEMBL-Plants: tr|I1KB59|I1KB59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305000 LjG1.1_chr1 74392370 74397378 -
2 domain predictions
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LotjaGi1g1v0305000.4
n.a. Methyl esterase 17; TAIR: AT3G10870.1 methyl esterase 17; Swiss-Prot: sp|Q9SG92|MES17_ARATH Methylesterase 17; TrEMBL-Plants: tr|I1KB59|I1KB59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305000 LjG1.1_chr1 74392485 74397342 -
2 domain predictions
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LotjaGi1g1v0371800.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT5G21950.6 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9BV23|ABHD6_HUMAN Monoacylglycerol lipase ABHD6; TrEMBL-Plants: tr|G7J939|G7J939_MEDTR Alpha/beta fold hydrolase; Found in the gene: LotjaGi1g1v0371800 LjG1.1_chr1 84998794 85001092 -
2 domain predictions
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LotjaGi1g1v0401400.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G25770.3 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|O34973|YTAP_BACSU Putative hydrolase YtaP; TrEMBL-Plants: tr|I1K9B3|I1K9B3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0401400 LjG1.1_chr1 88934033 88942860 -
2 domain predictions
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LotjaGi1g1v0514800.1
n.a. Methyl esterase 11; TAIR: AT3G29770.1 methyl esterase 11; Swiss-Prot: sp|Q9FW03|MES11_ARATH Putative methylesterase 11, chloroplastic; TrEMBL-Plants: tr|V7B0N1|V7B0N1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0514800 LjG1.1_chr1 103740574 103748844 +
2 domain predictions
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LotjaGi1g1v0549600.2
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G38360.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q5R4F9|PPME1_PONAB Protein phosphatase methylesterase 1; TrEMBL-Plants: tr|I3SY68|I3SY68_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0549600 LjG1.1_chr1 108001263 108005386 -
2 domain predictions
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LotjaGi1g1v0605500.1
n.a. Methyl esterase; TAIR: AT2G23600.1 acetone-cyanohydrin lyase; Swiss-Prot: sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2; TrEMBL-Plants: tr|A0A0S3SVH2|A0A0S3SVH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605500 LjG1.1_chr1 115040799 115044845 +
2 domain predictions
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LotjaGi1g1v0674000.1
n.a. Alpha/beta hydrolase domain-containing protein 11; TAIR: AT3G52570.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q8K4F5|ABHDB_MOUSE Protein ABHD11; TrEMBL-Plants: tr|A0A151UF74|A0A151UF74_CAJCA Abhydrolase domain-containing protein 11; Found in the gene: LotjaGi1g1v0674000 LjG1.1_chr1 123992123 123996190 +
2 domain predictions
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LotjaGi2g1v0212400.1
n.a. Sigma factor sigB regulation protein rsbQ; TAIR: AT3G24420.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|A0A109QYD3|RMS3_PEA Strigolactone esterase RMS3; TrEMBL-Plants: tr|I3T2S9|I3T2S9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212400 LjG1.1_chr2 66072732 66077341 -
2 domain predictions
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LotjaGi2g1v0212400.2
n.a. Sigma factor sigB regulation protein rsbQ; TAIR: AT3G24420.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|A0A109QYD3|RMS3_PEA Strigolactone esterase RMS3; TrEMBL-Plants: tr|I3T2S9|I3T2S9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0212400 LjG1.1_chr2 66073351 66077080 -
2 domain predictions
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LotjaGi2g1v0295200.1
n.a. Alpha/beta hydrolase, putative; TAIR: AT1G13820.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|A7ZI96|MHPC_ECO24 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase; TrEMBL-Plants: tr|G7JWW5|G7JWW5_MEDTR Alpha/beta fold hydrolase; Found in the gene: LotjaGi2g1v0295200 LjG1.1_chr2 77010695 77016119 +
2 domain predictions
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LotjaGi2g1v0295200.2
n.a. Alpha/beta hydrolase, putative; TAIR: AT1G13820.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q8X5K0|MHPC_ECO57 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase; TrEMBL-Plants: tr|G7JWW5|G7JWW5_MEDTR Alpha/beta fold hydrolase; Found in the gene: LotjaGi2g1v0295200 LjG1.1_chr2 77012087 77015637 +
2 domain predictions
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LotjaGi2g1v0397700.1
n.a. Methyl esterase 10, putative; TAIR: AT2G23610.1 methyl esterase 3; Swiss-Prot: sp|O80477|MES3_ARATH Methylesterase 3; TrEMBL-Plants: tr|I1LHI0|I1LHI0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0397700 LjG1.1_chr2 89492683 89494232 +
2 domain predictions
 –