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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PR00469
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 34 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.029s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0018789.1
n.a. PREDICTED: thioredoxin reductase 2-like [Glycine max] gi|356561017|ref|XP_003548782.1| chr0 7397213 7400094 +
2 domain predictions
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Lj0g3v0049079.1
n.a. PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Cicer arietinum] gi|502166343|ref|XP_004513864.1| chr0 16575249 16581584 +
2 domain predictions
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Lj0g3v0049079.2
n.a. PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Cicer arietinum] gi|502166343|ref|XP_004513864.1| chr0 16575249 16582924 +
2 domain predictions
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Lj0g3v0049159.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356511355|ref|XP_003524392.1| chr0 16619511 16622163 +
2 domain predictions
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Lj0g3v0049349.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA2-like [Glycine max] gi|356529622|ref|XP_003533388.1| chr0 16742786 16746402 +
2 domain predictions
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Lj0g3v0085899.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA3-like [Glycine max] gi|356533385|ref|XP_003535245.1| chr0 34509104 34512194 +
2 domain predictions
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Lj0g3v0101099.1
n.a. Dimethylaniline monooxygenase [Medicago truncatula] gi|357436843|ref|XP_003588697.1| chr0 42816185 42818337 -
2 domain predictions
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Lj1g3v2036560.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA6-like [Glycine max] gi|356507869|ref|XP_003522685.1| chr1 23982085 23986890 +
2 domain predictions
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Lj1g3v4528740.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA8-like [Glycine max] gi|356572315|ref|XP_003554314.1| chr1 53502790 53504610 +
2 domain predictions
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Lj1g3v4764550.1
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502112410|ref|XP_004494322.1| chr1 57376410 57378105 -
2 domain predictions
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Lj1g3v4764680.3
n.a. PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10-like [Cicer arietinum] gi|502112410|ref|XP_004494322.1| chr1 57409399 57411939 -
2 domain predictions
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Lj2g3v1574220.1
n.a. PREDICTED: thioredoxin reductase 2-like [Cicer arietinum] gi|502161816|ref|XP_004512292.1| chr2 25107910 25114151 +
2 domain predictions
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Lj3g3v2948580.1
n.a. PREDICTED: apoptosis-inducing factor homolog A-like [Cicer arietinum] gi|502145876|ref|XP_004506219.1| chr3 36736821 36739222 -
2 domain predictions
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Lj3g3v3189630.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39390238 39392336 +
2 domain predictions
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Lj3g3v3189640.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39396640 39398724 +
2 domain predictions
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LotjaGi1g1v0318500.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|I1JY26|I1JY26_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318500 LjG1.1_chr1 76671797 76672545 -
1 domain prediction
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LotjaGi1g1v0399200.1
n.a. Flavin-containing monooxygenase; TAIR: AT5G25620.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q8VZ59|YUC6_ARATH Indole-3-pyruvate monooxygenase YUCCA6; TrEMBL-Plants: tr|I1JUR3|I1JUR3_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi1g1v0399200 LjG1.1_chr1 88622558 88627702 +
1 domain prediction
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LotjaGi1g1v0701500.1
n.a. Flavin-containing monooxygenase; TAIR: AT4G28720.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SVU0|YUC8_ARATH Probable indole-3-pyruvate monooxygenase YUCCA8; TrEMBL-Plants: tr|I1N9Y0|I1N9Y0_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi1g1v0701500 LjG1.1_chr1 126984907 126987173 -
1 domain prediction
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LotjaGi1g1v0744800.1
n.a. Flavin monooxygenase-like protein; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|I3T5D4|I3T5D4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0744800 LjG1.1_chr1 131814337 131818942 -
1 domain prediction
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LotjaGi1g1v0745100.1
n.a. Flavin monooxygenase-like protein; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|A0A072U3V7|A0A072U3V7_MEDTR Flavin-binding monooxygenase-like protein; Found in the gene: LotjaGi1g1v0745100 LjG1.1_chr1 131827852 131831244 -
1 domain prediction
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LotjaGi1g1v0745100.2
n.a. Flavin monooxygenase-like protein; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|A0A1J7IGQ1|A0A1J7IGQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0745100 LjG1.1_chr1 131828993 131831042 -
1 domain prediction
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LotjaGi1g1v0745200.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|I3T5D4|I3T5D4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0745200 LjG1.1_chr1 131850182 131853165 -
1 domain prediction
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LotjaGi2g1v0216000.1
n.a. Flavin-containing monooxygenase; TAIR: AT5G25620.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q8VZ59|YUC6_ARATH Indole-3-pyruvate monooxygenase YUCCA6; TrEMBL-Plants: tr|A0A151QUS7|A0A151QUS7_CAJCA Flavin-containing monooxygenase; Found in the gene: LotjaGi2g1v0216000 LjG1.1_chr2 66849698 66853555 +
1 domain prediction
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LotjaGi2g1v0352600.1
n.a. Thioredoxin reductase; TAIR: AT2G17420.1 NADPH-dependent thioredoxin reductase A; Swiss-Prot: sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2; TrEMBL-Plants: tr|K7LNQ6|K7LNQ6_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi2g1v0352600 LjG1.1_chr2 82865206 82871793 +
1 domain prediction
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LotjaGi3g1v0472200.1
n.a. Soluble pyridine nucleotide transhydrogenase; TAIR: AT5G22140.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|Q54NS9|AIFA_DICDI Apoptosis-inducing factor homolog A; TrEMBL-Plants: tr|A0A072UJ51|A0A072UJ51_MEDTR Pyridine nucleotide-disulfide oxidoreductase family protein; Found in the gene: LotjaGi3g1v0472200 LjG1.1_chr3 88925877 88929209 -
1 domain prediction
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LotjaGi4g1v0140200.1
n.a. Thioredoxin reductase; TAIR: AT2G17420.1 NADPH-dependent thioredoxin reductase A; Swiss-Prot: sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2; TrEMBL-Plants: tr|I1MMU1|I1MMU1_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi4g1v0140200 LjG1.1_chr4 21192106 21195751 -
1 domain prediction
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LotjaGi4g1v0449600.2
n.a. Flavin-containing monooxygenase; TAIR: AT4G13260.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SVQ1|YUC2_ARATH Indole-3-pyruvate monooxygenase YUCCA2; TrEMBL-Plants: tr|I1K5U9|I1K5U9_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi4g1v0449600 LjG1.1_chr4 82192429 82195255 -
1 domain prediction
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LotjaGi4g1v0449600.3
n.a. Flavin-containing monooxygenase; TAIR: AT4G13260.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SVQ1|YUC2_ARATH Indole-3-pyruvate monooxygenase YUCCA2; TrEMBL-Plants: tr|I1K5U9|I1K5U9_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi4g1v0449600 LjG1.1_chr4 82192628 82194633 -
1 domain prediction
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LotjaGi5g1v0062400.1
n.a. Flavin-containing monooxygenase; TAIR: AT5G11320.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9LFM5|YUC4_ARATH Probable indole-3-pyruvate monooxygenase YUCCA4; TrEMBL-Plants: tr|G7I6C3|G7I6C3_MEDTR Flavin-containing monooxygenase; Found in the gene: LotjaGi5g1v0062400 LjG1.1_chr5 10446259 10449318 -
1 domain prediction
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LotjaGi5g1v0137700.1
n.a. Thioredoxin reductase; TAIR: AT2G41680.1 NADPH-dependent thioredoxin reductase C; Swiss-Prot: sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3; TrEMBL-Plants: tr|A0A0S3SU39|A0A0S3SU39_PHAAN Thioredoxin reductase; Found in the gene: LotjaGi5g1v0137700 LjG1.1_chr5 33011517 33019785 -
1 domain prediction
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LotjaGi5g1v0137700.2
n.a. Thioredoxin reductase; TAIR: AT2G41680.1 NADPH-dependent thioredoxin reductase C; Swiss-Prot: sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3; TrEMBL-Plants: tr|I1L9Y6|I1L9Y6_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi5g1v0137700 LjG1.1_chr5 33012282 33018682 -
1 domain prediction
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LotjaGi5g1v0151000.1
n.a. Flavin-containing monooxygenase; TAIR: AT4G28720.1 Flavin-binding monooxygenase family protein; Swiss-Prot: sp|Q9SVU0|YUC8_ARATH Probable indole-3-pyruvate monooxygenase YUCCA8; TrEMBL-Plants: tr|I1N9Y0|I1N9Y0_SOYBN Flavin-containing monooxygenase; Found in the gene: LotjaGi5g1v0151000 LjG1.1_chr5 39339499 39341819 -
1 domain prediction
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LotjaGi6g1v0006900.1
n.a. Flavin-containing monooxygenase; TAIR: AT1G04610.1 YUCCA 3; Swiss-Prot: sp|O23024|YUC3_ARATH Probable indole-3-pyruvate monooxygenase YUCCA3; TrEMBL-Plants: tr|V7BK55|V7BK55_PHAVU Flavin-containing monooxygenase; Found in the gene: LotjaGi6g1v0006900 LjG1.1_chr6 1367396 1371778 +
1 domain prediction
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LotjaGi6g1v0044500.1
n.a. Flavin-containing monooxygenase family protein; TAIR: AT1G48910.1 Flavin-containing monooxygenase family protein; Swiss-Prot: sp|Q9FVQ0|YUC10_ARATH Probable indole-3-pyruvate monooxygenase YUCCA10; TrEMBL-Plants: tr|A0A072TN89|A0A072TN89_MEDTR Flavin containing monooxygenase YUCCA10-like protein; Found in the gene: LotjaGi6g1v0044500 LjG1.1_chr6 8373270 8375624 -
1 domain prediction
 –