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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0140200 |
| Transcript ID | LotjaGi4g1v0140200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin reductase; TAIR: AT2G17420.1 NADPH-dependent thioredoxin reductase A; Swiss-Prot: sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2; TrEMBL-Plants: tr|I1MMU1|I1MMU1_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi4g1v0140200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:21192106..21195751) extracted from Lotus japonicus Gifu genome v1.2.
CAAAATGAAAGTGAAGGGGGTGAACTCCGTGTTCTGTTCTAATAATGAAACGATCCGGAAAATTAACTTTCGGAGCGATC CGACATTGTATATCTCAGAAAAAAAACACGGAGGGACATTTAAGTATTTCCCCACTATTAAGTGGGGTGACATATCTAGT GCTTGGGGTGCAAATTCTAAGTCCTTCTTCACTCGTCTTCTTCTGTTTATCAACATTAACACAATAGATGACTCAAGACA AGTCTTTATCCTTTACATGATCTTCCAAGTAACTTTGAGCATGGAACACTCAAGATTTGCACCCAAATGTTAACAAAGTC TCAAAACTTCTTATTCTTAACTTAGCCAATCAAGGAATAAACTTGATTTACAAAACAAAGAACATCTAGGCTTGTTATTT GTAAAAATGCCATTATCAGCAAAGCAAAGCACCATCAAAGCAACACCCACACTACACACCTTCTTTCCCTTGCCATTGCT TCTCCTCCCAAGCAACACAAATAAATGCATTTCTCCCAATTGGAACCAAGAGTAGTGACATTCTCAACAATAAAGTAAAA TAAAAAAAATAAATAAAAAAAACAGAAATAGTTGAAATGAGAATTTTCTCAAACAAGTTCTTCGCCTCAGCGCGCAACCT CGTAGGCATTGGTCTCGCTTGCTCCACTTGCGCCGCCACCGCCGCCGCTTCTTCTTCCTCCGCCGCTACTTCCACCACCT CCTCCTCCTCCTCCGCCGGCGACTCATATTCTTCCGATGACTCCGTCACGGATGACCCAAATGTCCTCAAAACGAAGCTC TGCATCATCGGAAGCGGCCCCGCAGCTCACACGGCCGCCATTTACGCCGCCCGCGCCGCGCTGAATCCGGTCCTCTTCGA AGGCTTCATGGCTAACGGCGTCGCCCCCGGCGGCCAGCTCACCACCACGACCGACGTCGAGAATTTCCCGGGGTTTCCCG ACGGCATCCTCGGCGCCGACCTAATGGACCGCTGCCGCCAACAGTCGCAGCGCTTCGGCGCCACAATCGTCACCGAAACG GTGTCCAAGGTGGACTTCTCCCGCCGCCCATTCAGGGTCGTCACCGATTCCACCACCGTGGAGGCAGAATCCGTCATCGT CGCCACCGGCGCCGTCGCGCGGCGGCTCGAATTTGACGGCGCCGGTGGCGGACCCGGCGGATTCTGGAACCGAGGGATAT CGGCTTGCGCCGTTTGTGATGGCGCAGCGCCGATATTCCGGGATAAGCCGCTGGTGGTGATCGGCGGCGGGGACTCTGCC ATGGAGGAAGCCAATTTCCTCACAAAGTTTGGTTCCAAAGTGTTCATAATTCATAGGAGAGATAAGTTTAGGGCTTCTAA GATAATGCAGGAGAAGGTGATGAAGAATCCCAAGGTTGAGGTGTTGTGGAATTCAGAGGTGGTTGGGGCGTATGGTGATG ATAAGGGTAGGGTTCTTGGGGGAGTGAAGGTGAAGAATGTGGTGAGTGGGGTTGTGTCTGATTTGAAGGTTTCTGGTTTG TTCTTTGCAATTGGGCATGAGCCTGCTACTAAGTTCTTGGAGGGTCAACTTGAACTTGACTCTGATGGATACATTGTAAC TAAGCCAGGGACTACAGTGACCAGTGTTGAGGGAGTTTTTGCTGCTGGTGATGTTCAGGACAAGAAGTATAGGCAAGCTG TTACAGCTGCTGGCACTGGTAATTCACTAATTCTTACTCCTTCATTTTGGAAAAGCAATAAGATTTATTCATTTATTCTC AATCTCAACTGGTTTTATGATAATTGCTTGTTCATGTCATTCCTGCTTGTTTTCTCGATGTTCTGTATGTATTTTCTTAT GCTTCCTTTTAAATCAAGTGGATTATTGTGAACAGGTTTAGTCATGACCGTAGGTTAATATGATACCCCTAGTTTTGGAA CATTGTGTTTTGATAGTCATGTTTTCTCCATATTCTTGTTGTATTCCTCTTTTATTTGGTAATGGCATTTGGTAGAATCA CATGCCCTTACAGCTTATTTTCTTATGCAATTAGTTTACAATATAGAAACCCAAGTTTTCTGGCCTTCTATTAACTATTG AAGAGATCAAATAGGGACCAGAGATTTAGGTCTGAGATTTAATCCTTAGTGAGAATTCAGCAAGCATATTTCTTATAAGA TTTAGCATTGCATTAGCTTTCTCTTTGTTTGTCAGATCTCCCTTATATGTGAGAGGGGGTTACAAGTTGTTCCTTCCATT CTTTTATGCCTATATTGATCTGTTTAATTTGACATCTTTCCTTCATGGGTTGCTCTTTAAGCATTCATTCTTCTGTTTTC TGTACATGTGTGTTTCCCATTGATATCTTTCGCTGAAGCGTAGTTAGTACCTTACATGTCGCACAGGGTTGTGTGCTCTT CCCCTTCGTTTATCCCCACTCTTCAATAATTTCAAATAGATATACAGCTTAGTTATTCATTTCTTCAATCCTATCTGCAA GCATATAGATATAAATACCTTCTCACATTGCTGAATGTTGCGCTTGAAGTGCTGATAAAAATATAATTAGCCGCAAAATT AACAGATCGATAACTGTTATCAAAACTAAATTATTATGATTTGTAGTCCTTATGTGGATCTTGAAATTCGGTTTCACTCC TTATTTATTGCTTCATTCCAGATCCCTTTTTCATTTGTTTGGGAAATGAGAACCAACATAAGGGATCCATTTTGATATAA ATAGGCTTGATCCTATTCATGAAAAGTAGATTTTCTTAATTTATTTTCAAGTTTCTTTTCTTCATGTTACATCATGTGAT TGCTTGTGTTTGGCATAGGAATGAAACACTTGCTTGACTATAGGAGCATAGTTCATTGTGTGATCATTGATATGCTTTTC TGTACGTTCTGTTGTAAAAATGTGACCTTACTTGATATGCGTAATGCAATCAGAATTAGATCTATGTAGCAAAAGCTTTA TTCTCTCAAAGGATAATGGAAAATTGGAAATCATGCTATGAATGCAGGGTGCATGGCAGCCTTGGATGTAGAACATTACT TGCAAGGGATTGGCTTACCGCGAGCGTAGGGGTGAATGAATTTGCTAGGTTATGCCCAGAGTTCAAAAGATTCTTTCATT AGAGACAATGTCTAATTTACATAAGATAGTGAAAAGCTACTTCTGGACCCATTCATCATTTGATTGAAGAGCAAAATAGG ATTGCATGATTTTCTCATATTTCTTTTCAATCATGACTTCATCATAAATATAATGGAACCTAAATCGGTGCCAGAAAAAA AAAGTGTCATAAGTTTATGAATCTTAATGTACATGTGATACTTTTTTTTTGGTAATCAAAGATTAAATTGAACCAAGCAC AAGGGATGCTTGAAACCCAATTACAAGGATAAGAAAAAGAGAACAACAGCAAATAAATGGCAATCATGCTAAATATGTTA GAACATAATGTTAATAAATGACAATCATGCTAAAACATGTTAGAACATAATGTTAATAATCCATTCTATTATCTGTTGGG GAGTCTGTTTCTAGGTTTGAGATCATTTCATATTCCCAGTGTTAGTGCATAGTCTCGGTTAACTTCAATTAATATATTGT ATTCTGTTTTAGTTACTTTAAGTTGTAACTGGTTTCAAAAAAAAAA
CDS sequence (LotjaGi4g1v0140200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATTTTCTCAAACAAGTTCTTCGCCTCAGCGCGCAACCTCGTAGGCATTGGTCTCGCTTGCTCCACTTGCGCCGC CACCGCCGCCGCTTCTTCTTCCTCCGCCGCTACTTCCACCACCTCCTCCTCCTCCTCCGCCGGCGACTCATATTCTTCCG ATGACTCCGTCACGGATGACCCAAATGTCCTCAAAACGAAGCTCTGCATCATCGGAAGCGGCCCCGCAGCTCACACGGCC GCCATTTACGCCGCCCGCGCCGCGCTGAATCCGGTCCTCTTCGAAGGCTTCATGGCTAACGGCGTCGCCCCCGGCGGCCA GCTCACCACCACGACCGACGTCGAGAATTTCCCGGGGTTTCCCGACGGCATCCTCGGCGCCGACCTAATGGACCGCTGCC GCCAACAGTCGCAGCGCTTCGGCGCCACAATCGTCACCGAAACGGTGTCCAAGGTGGACTTCTCCCGCCGCCCATTCAGG GTCGTCACCGATTCCACCACCGTGGAGGCAGAATCCGTCATCGTCGCCACCGGCGCCGTCGCGCGGCGGCTCGAATTTGA CGGCGCCGGTGGCGGACCCGGCGGATTCTGGAACCGAGGGATATCGGCTTGCGCCGTTTGTGATGGCGCAGCGCCGATAT TCCGGGATAAGCCGCTGGTGGTGATCGGCGGCGGGGACTCTGCCATGGAGGAAGCCAATTTCCTCACAAAGTTTGGTTCC AAAGTGTTCATAATTCATAGGAGAGATAAGTTTAGGGCTTCTAAGATAATGCAGGAGAAGGTGATGAAGAATCCCAAGGT TGAGGTGTTGTGGAATTCAGAGGTGGTTGGGGCGTATGGTGATGATAAGGGTAGGGTTCTTGGGGGAGTGAAGGTGAAGA ATGTGGTGAGTGGGGTTGTGTCTGATTTGAAGGTTTCTGGTTTGTTCTTTGCAATTGGGCATGAGCCTGCTACTAAGTTC TTGGAGGGTCAACTTGAACTTGACTCTGATGGATACATTGTAACTAAGCCAGGGACTACAGTGACCAGTGTTGAGGGAGT TTTTGCTGCTGGTGATGTTCAGGACAAGAAGTATAGGCAAGCTGTTACAGCTGCTGGCACTGGGTGCATGGCAGCCTTGG ATGTAGAACATTACTTGCAAGGGATTGGCTTACCGCGAGCGTAG
Protein sequence (LotjaGi4g1v0140200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIFSNKFFASARNLVGIGLACSTCAATAAASSSSAATSTTSSSSSAGDSYSSDDSVTDDPNVLKTKLCIIGSGPAAHTA AIYAARAALNPVLFEGFMANGVAPGGQLTTTTDVENFPGFPDGILGADLMDRCRQQSQRFGATIVTETVSKVDFSRRPFR VVTDSTTVEAESVIVATGAVARRLEFDGAGGGPGGFWNRGISACAVCDGAAPIFRDKPLVVIGGGDSAMEEANFLTKFGS KVFIIHRRDKFRASKIMQEKVMKNPKVEVLWNSEVVGAYGDDKGRVLGGVKVKNVVSGVVSDLKVSGLFFAIGHEPATKF LEGQLELDSDGYIVTKPGTTVTSVEGVFAAGDVQDKKYRQAVTAAGTGCMAALDVEHYLQGIGLPRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| Phobius | 15 | 26 | 12 | - | – | |
| Phobius | 27 | 36 | 10 | - | – | |
| MobiDBLite | 37 | 59 | 23 | - | – | |
| Phobius | 37 | 387 | 351 | - | – | |
| SUPERFAMILY | 61 | 379 | 319 | 8.7E-46 | ||
| PANTHER | 62 | 383 | 322 | 2.3E-180 | – | |
| PANTHER | 62 | 383 | 322 | 2.3E-180 | – | |
| TIGRFAM | 67 | 379 | 313 | 4.7E-115 | ||
| PRINTS | 67 | 89 | 23 | 1.9E-76 | – | |
| Pfam | 67 | 368 | 302 | 1.3E-47 | ||
| PRINTS | 68 | 87 | 20 | 4.8E-33 | – | |
| Gene3D | 70 | 375 | 306 | 2.2E-123 | ||
| PRINTS | 105 | 120 | 16 | 1.9E-76 | – | |
| PRINTS | 126 | 136 | 11 | 1.9E-76 | – | |
| PRINTS | 170 | 188 | 19 | 4.8E-33 | – | |
| PRINTS | 171 | 179 | 9 | 1.9E-76 | – | |
| Gene3D | 186 | 317 | 132 | 2.2E-123 | ||
| PRINTS | 197 | 209 | 13 | 1.9E-76 | – | |
| ProSitePatterns | 204 | 226 | 23 | - | ||
| PRINTS | 214 | 238 | 25 | 1.9E-76 | – | |
| PRINTS | 218 | 236 | 19 | 4.8E-33 | – | |
| PRINTS | 266 | 282 | 17 | 1.9E-76 | – | |
| PRINTS | 305 | 321 | 17 | 4.8E-33 | – | |
| PRINTS | 307 | 328 | 22 | 1.9E-76 | – | |
| PRINTS | 332 | 354 | 23 | 4.8E-33 | – | |
| PRINTS | 342 | 360 | 19 | 1.9E-76 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thioredoxin-disulfide reductase activity | Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Removal of superoxide radicals | Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0140200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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