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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0137700 |
| Transcript ID | LotjaGi5g1v0137700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin reductase; TAIR: AT2G41680.1 NADPH-dependent thioredoxin reductase C; Swiss-Prot: sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3; TrEMBL-Plants: tr|I1L9Y6|I1L9Y6_SOYBN Thioredoxin reductase; Found in the gene: LotjaGi5g1v0137700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:33012282..33018682) extracted from Lotus japonicus Gifu genome v1.2.
GATATGACACAGGATGAGGGGTTGAAGATCTGGTGTACTCCCCCCACCCTATATTGAAACTAAGTTGTTGAAGGTCTCTT TAGATCCTCCTAGCTACGAGTTTTAGGATTCCTTTACTCGTTATGAGTTCATTCTACACAGAGAACAAAACTATTGACTT TTCAGTTCAGAGTCTGACTTCTTACTGTATGTGATGTAATTCTTAATTTCTTATTGGTTTTACTTTTATTTTACCAAGAT AAGCAAAGTTGACAATTACATCTTTTTCCTTCTCACAGCAAAAGGAGTTGAGAATGTGGTAATTATAGGATCAGGCCCTG CAGGATACACAGCAGCAATATATGCAGCCCGTGCCAATTTGAAACCTGTAGTATTTGAGGGGTACCAAGTGGGTGGTGTT CCCGGGGGACAGTTGATGACTACAACTGAAGTGGAGAACTTTCCAGGATTTCCTGATGGGATAAGCGGGCCTGATTTGAT GGACAGGTATTAAAAACAGAAGTAAAAACTTGTTATAGCTCATGTTACCTTGTAATTTATTGTACTTGTATGGACCCTGA AGTTAACACATAATCTAATTATCTAGGATGCGACGGCAAGCTGAACGTTGGGGAGCAGAATTGTATCAAGAAGATGTTGA AGCTATTGATGTGAAAAATAGCCCTTTTACTGTCCAAAGTAGTGAACGTAAGGTGATATGTTCATTAACAGCAAGCTGAT TTACGATTGCATAGATATTAATATACCTGAACATTAAGGCTTGTGTCTTTTCAACTTAATTGGTTCTTTGAGTCCACTGT GATGTGCTTCTTTTATGGAATTAAATTATTGCAAATTATTGTATATATTTGGTAGCAGCTTTTATTTGAAAACAATTTGT TGAGTATTTCACTCTTAATGTGAGTCCTGAAAGTCCTATAAATTACAGACTATCTACTGAATTATTACCATTACTTTTGA TATTGATTTACATGCATTCTGAGTTCTGTCATCAGTTTGTTGTCTAATTGTAATACCTTTCTAGTCATGTTTCTTTGGAG GAAAAGTTTTTGTTAGTTACATAAGGTTTTCTTGATCACATTATAATTCAGGTTAAGTGCCATGCTGTCATCTATGCTAC TGGGGCCACTGCAAAACGACTTAGGCTACCCCGAGAAGATGAATTTTGGAGCCGAGGAATTAGTGCTTGTGCAATTTGTG ATGGTGCATCACCTCTCTTTAAGGGTCAAGTTCTTGGTGTCGTAGGTGGGGGGGATACAGCTACGGAGGAAGCATTATAC TTGACAAAATATGCTCGTCATGTTCACCTACTTGTACGGCGAGACCAGCTAAGGGCTTCCAGAGCCATGCAAGACAGGTG TGTCTAATTAATACTTCCCAGAGGCATGCCTGTTAGTTGTTAAGGAACAGCTAACTCTGCAGTGTATGTTAAAGTTTACA GTAATTACCTCCTCCTATACACTTCATAATGTATTCCTTTTAGTTTCTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCACACACACACACACACACACACACACATGCACACATAATTCCGGTGGAAAGATGGAATTTAAACAAACTGTGTTAG ATTAGTCTTCTAAATATTTCGTTGATGGCAAGGTTCTCTATAGATGAAGCTTTATTTAACATTAGGCATAATGTCTTTTA CTTTCCATCTTACGTTGATTGAGGTCATGCATATTGTAAATTATTGTATTTTTTTCTATTTGTATTGGCTTCTTTGTTTA ATAATGAATTTTGTGTCTTCCTTTTTTTCTTTTTATATGCATAGTTGAGTTGATGGGTAATCAGTCCTTTCTTGCTATTT AGTGATCTGTTAAGAATTCTGCCTGTGCCAATAATTTGTGTTGGGTGTAACAATAGTTTGTAGGCTTTTTGTTACCAATC TGAAGTTTCTTTTGGCTGTAATTCACTTGGAAAATATTTGGTATTTTAAGGTGTCTTGTGCTTTGGATTATAGTAGTGAA AACTATATTTATCCTATGGACATAACATGTTTGATCTTCTCGCTTATGGGGAAGCCATGCTCACTCTCTTTTTGCACATG GATTCAAAATACTGTTTTGCATACAAGTGTAGTATTCTTATGTTTGTCATTATGTCTGTATTTCATATAGACTTCGAAAA AGCAATTATATCATGTTGTAGTACCATTTTAGTGCAGGCAAATGGAAGCAAATTATTCGGAATGTGAAATTTTACATTAA TGGCCAAATACTAGAAGCGTATTTTATTTGAGGTCTAAATTATCATTCCAATGTGGGCCATGAGCTCATGCTATGAGCTT CTGTATCTGGATTCTGATATTTAATTAGCAAAGAGCAATTATTTTTATTTAAGTTTATCTTAGAGGAGAAATTGAAGATT ACCTTTTTCCTGGGCATTTCTTTGCATTCTCCAGACTCTAGGTAGTAGGTACTAGTTGTTTGACTCTTGAGTTTTTATTA TGAGGATAAACAAATAGGATTTTGTATTATATATCTTCTTTTGTTGTCTTCCTAATCAGTCTGTATTTATGTGGAGTGTT TTATTAGGATATCTTTATGATGGTGAGTTATCTACTAAGTACTAATGAACATTTTTTATGTGAGTTTTCAACTCCCCTGA ATGTTTGTTTAACAGGTTGATTATCACGAATGTTTCAGAGTGTTTGACAATCCCAATGTCACCGTGCACTTCAATACAGA GACTGTGGACATTGTGAGCAATACTAAAGGACAGATGTCTGGCATTTTAATTCGAAAGATTGATACTGGGGAGGAATCTG TGTTGGAGGCTAAAGGGCTATTTTATGGCATAGGCCATTCACCAAATAGTGAACTGTTGAAAGGTCAAGTAAAACTTGAC CAGTCTGGCTACATACTTGTTGAGGAGGGTACTGCAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGT AACCTATCGAGTGCCTTTCTGCAAGATAGTCTACGATTCTACATTAAGAAGAATAATAGGGAGTATTGGGAATCAGAGCC TCAACCTGCTATTAACAACATAATCTGTTATTAATAGAAATAAAAGGAAAACTGTAGTAACTGTTTAGTTGGTTACTGTA TATAGAGAGCTGTTATAACTTATAAGGCATTTGTAGAGAGTAATTGGAGGTTATCCATTGTTTTGGTTAAAAGAGGGAGA GAAGTCCAGTCTCATACTGGGAGAGGAGAACCCACGTTCTACACTGCTATTCACCTCTATTCTTTTCACCTTGGTACCCA TTCAGAGATTGTGTGCTTTATATATAACGATCCATTACTGTATCTGTACCTAAATTATGGTCCAGTTCTATTGCGATGCT ACATTGTCTACAATAATGTTATACAACGTATATTAAGTTTAGGCAGTAGCTGCAAGAGTAGGAGGATGTCATTTGACCAA CATCTTATAAATATATATCATTTTTTAACAGTCACTGACATAGCACAACGGCGTCATTTGATCCATATAACTATTTTCTG ATGAGATAAGGCTTTATTATTTGTTAAAAAAATTTGAAATGCCATTTTTGGTGGCAGAATTTTGACCAGTTCCCATTAAA TTAATTATGATAGCTGTTAATATGTAGATGTAGCATATGTTTGATTATGAATTATGCAAATTTATTATGAAGTTTATTGT CTGAGTTTATTTTGTGATTTGCTATTACCTTCTGTATGGAATAAAAAGTCACTGTGGTAGGCACCTTTATAAAGTTTATT TCTTATACTCTCATAGGACCATGAGTGGAGGCAAGCCGTAACTGCTGCTGGATCTGGATGCATTGCTGCTTTATCAGTTG AGAGATATCTTGTTAGCAATAATCTTCTTATAGAGTTCCATCAGGTATCAGAGTTCAAAGAGCTCCAATTTTATATGCAC TTATTTTACTTCTTGTATGTATAACTAAAATGAATTGCATATCATATTGTCAGCTTACTATGTTTTTTTAATTCACGTTC TTAATTATTGCGCTTCACTCAGTAGAAGCAGAATCGATTTTAGCTGGATTTGTTTGTAAAATGTTTATAAATTGGACAAA CATACAAACCTTTATAAAGATAGTGTATTGAATTCTCAAATCTACTGAGTTCCTTAAAATTGTCAGTGGGAAATGTTTGT AAGTAGTTCTCTATTGGTTTTGGAGCTCAACTAAACTATTGTCTTCGAGCAGTCTGCTGTATTTCTCTTATCCCATTGAC ATGCAATGAAATCTTATTTAATGACATAGTGATAGGTTGTGTGGGTGATGTGCTGCAGAGGTTTACAGTGAAAGGAACAT AAAAACTTGAGTGTGCATCATTCATTCTTATATTTTACTTTTTAAAATCTTGCACAGACGACCTTTCTCGTTTATAAAGC TATTGACAATAATTCACAGTAAATTATTTTACCTAAATAGGGATCGTCTGAGGAAATGTTGATTATTTACCTAGTGAAAT AGTGGGAAATGGCTCTGGTTGTTTTGATGGATGTGGTCTGATGAAGTCATACACATTTGGATGCAAACCAAAGAGCACTT ATTGTATTCGTACCTTATTTAGTGCTTTTTCTAGTAGATAAGCTCCAATAAGCCCTTATCCAAGCAGGCTCATTACTATT AGTGTTTTGAATATGCTTTTACTAAAAACCTTGTTATCTGCCGCTGTTCAGGATCTTTCCAAGAGAAGGACATTAAAGCA AATATGAAGAAATGATATACCAACCTATTATACGTTTCTGTTTGGCCCTATGTTTAAAGAATATGAATGGCATAAATTTG TTGCTAGTAAACAATAACATACTAATAATAGGGAACTGTCATTACATTAAATCAGTTGATTAATTCCCTATTCATGACAT GTCGTTATAGTGTTGTTTGGTCTACGTAGCTGATTGCGCCTAGTTGAAAGAGGATTTCAATGTTGTAGTTGATTCACGCA GTATATTCCGATACAAATCTCAACCTTCCAATTTTATTTCCTGTTTCAGCCTAAAACTGATGAGGTTAAGAAGGAACTAA CAGACAGGGATGTTCACGAGGGCTTTGACATTTCACTTACAAAGCATAAGGGACAGGTACGTCTTCCTTATAGGTGCTTG TGCTAATGGGATTAATTCTCAGCATCTGTTATGTTCATATAGTCTCTTTTTTATTTAATTCTTTGGTTTTATTATAATAT AGGCTCTTATTTGTGATTTCCTCTTTACAGTATGCTCTACGAAAATTGTACCATGAAAGTCCCAGGCTTATATGTGTATT ATATACGTCACCCACATGTGGACCGTGTAGAACACTGAAGCCAATTCTTAGTAAGGTATGTGAAAAAGGGAGGTTTAAAG TTATCTTAGTACTTGTTGAATGAGAAAAAGACAAGAGGCACTAGTTGAATCAGTGTGTTTCAACTACTCAGCAGGGTCAA CTACTCATGACATTATACGTAAGCACTTAGTAGGCATGAATATACAATGGTCTTGTGATACTGATATGGTGGCATGGTGC AGAACCTTTTTTTTTCAGTAAATTAAAAATGAATAGCTACGCTGCATCATGCATTGAGATGTATGGGACTATGGGTCCAT CTACTGCTTGTTTTCTCGCTTTGGAATGTAGTGGAATAGATCTACTTAGATGTTAGGGTGTTCTCAAAATCTCAATAACA ATGTGTTATGGACTAGAGCCGGCCCAGTCCGCATTGGCCCACCTTGCCCGGCCAAACTGAGTAGAGTTTAGGGCCAGACT GCGTTTTGGGCCAGGAATTTGGTCCGCAACACAATACATAACTCTTTGTACTTGACTGAAATGAGTGCATATTACCATGT ATTTGCAATTTTACGTACAAGCATGCTGTCATGCCGTTTTGAAATGAGTAAGCATTGATGTTGAACTGCTGCATGGCATA TGAAGTAAATGAAACTACTTTCGCTTCCATATTTATCATTACTTTTTTTAACATCTACCTTGGCAGGTGATTGATGAATT TGATCAGAATGTACATTTTGTCGAAATTGATATAGAGGAAGATCAAGAAGTAGCGGCAGCAGCTGGAATCATGGGCACTC CATGTGTGCAGTTTTTTAAAAACAAGGAGATGCTTAAGTGAGTCATATTTGATCTATTTCTCTAATTCTCCTATTTTTCA TGTACCAAAATATAAGATTCAAGCATAAGATTGTTATCATAGTATCCCTAAAATATGAACATGAGCTGAAAATGGATATC CTAAAGCTGCTCACTTCCATCTTTATGCTTAGTGACAGGCCTGCTTCATGGATATTCTTGCTGGTTTTTGACCGCTGATG ATTGTACACTGATTTTGCAGGACTGTTTCAGGAGTCAAAATGAAGAGAGAATACAGAGAATTCATTGAATCGAATAAATA A
CDS sequence (LotjaGi5g1v0137700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCATTCTACACAGAGAACAAAACTATTGACTTTTCAGTTCAGAGTCTGACTTCTTACTCAAAAGGAGTTGAGAA TGTGGTAATTATAGGATCAGGCCCTGCAGGATACACAGCAGCAATATATGCAGCCCGTGCCAATTTGAAACCTGTAGTAT TTGAGGGGTACCAAGTGGGTGGTGTTCCCGGGGGACAGTTGATGACTACAACTGAAGTGGAGAACTTTCCAGGATTTCCT GATGGGATAAGCGGGCCTGATTTGATGGACAGGATGCGACGGCAAGCTGAACGTTGGGGAGCAGAATTGTATCAAGAAGA TGTTGAAGCTATTGATGTGAAAAATAGCCCTTTTACTGTCCAAAGTAGTGAACGTAAGGTTAAGTGCCATGCTGTCATCT ATGCTACTGGGGCCACTGCAAAACGACTTAGGCTACCCCGAGAAGATGAATTTTGGAGCCGAGGAATTAGTGCTTGTGCA ATTTGTGATGGTGCATCACCTCTCTTTAAGGGTCAAGTTCTTGGTGTCGTAGGTGGGGGGGATACAGCTACGGAGGAAGC ATTATACTTGACAAAATATGCTCGTCATGTTCACCTACTTGTACGGCGAGACCAGCTAAGGGCTTCCAGAGCCATGCAAG ACAGAGTGTTTGACAATCCCAATGTCACCGTGCACTTCAATACAGAGACTGTGGACATTGTGAGCAATACTAAAGGACAG ATGTCTGGCATTTTAATTCGAAAGATTGATACTGGGGAGGAATCTGTGTTGGAGGCTAAAGGGCTATTTTATGGCATAGG CCATTCACCAAATAGTGAACTGTTGAAAGGTCAAGTAAAACTTGACCAGTCTGGCTACATACTTGTTGAGGAGGGTACTG CAAAAACTTCAGTTGAAGGTGTATTTGCTGCTGGAGATGTGCAGGACCATGAGTGGAGGCAAGCCGTAACTGCTGCTGGA TCTGGATGCATTGCTGCTTTATCAGTTGAGAGATATCTTGTTAGCAATAATCTTCTTATAGAGTTCCATCAGCCTAAAAC TGATGAGGTTAAGAAGGAACTAACAGACAGGGATGTTCACGAGGGCTTTGACATTTCACTTACAAAGCATAAGGGACAGT ATGCTCTACGAAAATTGTACCATGAAAGTCCCAGGCTTATATGTGTATTATATACGTCACCCACATGTGGACCGTGTAGA ACACTGAAGCCAATTCTTAGTAAGGTGATTGATGAATTTGATCAGAATGTACATTTTGTCGAAATTGATATAGAGGAAGA TCAAGAAGTAGCGGCAGCAGCTGGAATCATGGGCACTCCATGTGTGCAGTTTTTTAAAAACAAGGAGATGCTTAAGACTG TTTCAGGAGTCAAAATGAAGAGAGAATACAGAGAATTCATTGAATCGAATAAATAA
Protein sequence (LotjaGi5g1v0137700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSFYTENKTIDFSVQSLTSYSKGVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFP DGISGPDLMDRMRRQAERWGAELYQEDVEAIDVKNSPFTVQSSERKVKCHAVIYATGATAKRLRLPREDEFWSRGISACA ICDGASPLFKGQVLGVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASRAMQDRVFDNPNVTVHFNTETVDIVSNTKGQ MSGILIRKIDTGEESVLEAKGLFYGIGHSPNSELLKGQVKLDQSGYILVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG SGCIAALSVERYLVSNNLLIEFHQPKTDEVKKELTDRDVHEGFDISLTKHKGQYALRKLYHESPRLICVLYTSPTCGPCR TLKPILSKVIDEFDQNVHFVEIDIEEDQEVAAAAGIMGTPCVQFFKNKEMLKTVSGVKMKREYREFIESNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 461 | 447 | 4.5E-248 | – | |
| PANTHER | 15 | 461 | 447 | 4.5E-248 | – | |
| TIGRFAM | 27 | 333 | 307 | 1.0E-116 | ||
| Pfam | 27 | 322 | 296 | 1.0E-49 | ||
| PRINTS | 27 | 49 | 23 | 4.0E-75 | – | |
| SUPERFAMILY | 27 | 332 | 306 | 1.05E-48 | ||
| PRINTS | 28 | 47 | 20 | 1.0E-33 | – | |
| Gene3D | 28 | 332 | 305 | 3.1E-121 | ||
| PRINTS | 64 | 79 | 16 | 4.0E-75 | – | |
| PRINTS | 85 | 95 | 11 | 4.0E-75 | – | |
| PRINTS | 129 | 147 | 19 | 1.0E-33 | – | |
| PRINTS | 130 | 138 | 9 | 4.0E-75 | – | |
| Gene3D | 146 | 272 | 127 | 3.1E-121 | ||
| PRINTS | 152 | 164 | 13 | 4.0E-75 | – | |
| ProSitePatterns | 159 | 181 | 23 | - | ||
| PRINTS | 169 | 193 | 25 | 4.0E-75 | – | |
| PRINTS | 173 | 191 | 19 | 1.0E-33 | – | |
| PRINTS | 221 | 237 | 17 | 4.0E-75 | – | |
| PRINTS | 259 | 275 | 17 | 1.0E-33 | – | |
| PRINTS | 261 | 282 | 22 | 4.0E-75 | – | |
| PRINTS | 286 | 308 | 23 | 1.0E-33 | – | |
| PRINTS | 296 | 314 | 19 | 4.0E-75 | – | |
| ProSiteProfiles | 345 | 471 | 127 | 9.828 | ||
| CDD | 372 | 468 | 97 | 2.58957E-64 | – | |
| Gene3D | 373 | 471 | 99 | 1.5E-19 | ||
| SUPERFAMILY | 379 | 469 | 91 | 8.1E-22 | ||
| Pfam | 383 | 468 | 86 | 8.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Thioredoxin-disulfide reductase activity | Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Removal of superoxide radicals | Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). | ||
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0137700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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