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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR23322
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0084689.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356564976|ref|XP_003550721.1| chr0 33737994 33740326 -
1 domain prediction
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Lj0g3v0087339.1
n.a. PREDICTED: FAS-associated factor 2-B-like [Glycine max] gi|356576614|ref|XP_003556425.1| chr0 35487962 35489523 +
1 domain prediction
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Lj0g3v0098329.2
n.a. UBX domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297799700|ref|XP_002867734.1| chr0 41612926 41615812 -
1 domain prediction
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Lj0g3v0098339.1
n.a. Os09g0525600 [Oryza sativa Japonica Group] gi|115480255|ref|NP_001063721.1| chr0 41617437 41619214 -
1 domain prediction
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Lj0g3v0098339.2
n.a. UBX domain-containing protein [Arabidopsis thaliana] gi|42570051|ref|NP_680549.3| chr0 41617437 41621261 -
1 domain prediction
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Lj0g3v0194529.1
n.a. Unknown protein [Arabidopsis thaliana] gi|14596001|gb|AAK68728.1| chr0 94903795 94904414 -
1 domain prediction
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Lj0g3v0210329.1
n.a. UBX domain-containing protein [Theobroma cacao] gi|508776680|gb|EOY23936.1| chr0 105673181 105676997 -
1 domain prediction
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Lj0g3v0253199.1
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131476062 131483209 +
1 domain prediction
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Lj0g3v0253199.2
n.a. PREDICTED: UBX domain-containing protein 7-like [Cicer arietinum] gi|502154165|ref|XP_004509607.1| chr0 131479192 131483209 +
1 domain prediction
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Lj2g3v2017300.1
n.a. Ara4-interacting protein [Arabidopsis thaliana] gi|13160609|dbj|BAB32954.1| chr2 30772339 30776318 -
1 domain prediction
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LotjaGi2g1v0431700.1
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|I1K0C8|I1K0C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0431700 LjG1.1_chr2 92868553 92874093 -
1 domain prediction
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LotjaGi3g1v0376600.1
n.a. UBX domain-containing protein 2; TAIR: AT4G00752.1 UBX domain-containing protein; Swiss-Prot: sp|Q4V3D3|PUX9_ARATH Plant UBX domain-containing protein 9; TrEMBL-Plants: tr|A0A072TZJ6|A0A072TZJ6_MEDTR Ara4-interacting protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924675 -
1 domain prediction
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LotjaGi3g1v0376600.2
n.a. FAS-associated factor 2-B; TAIR: AT4G11740.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|F4JPR7|PUX8_ARATH Plant UBX domain-containing protein 8; TrEMBL-Plants: tr|A0A1J7HI96|A0A1J7HI96_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376600 LjG1.1_chr3 76910606 76924765 -
1 domain prediction
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LotjaGi4g1v0151000.1
n.a. UBX domain-containing protein; TAIR: AT1G14570.1 UBX domain-containing protein; Swiss-Prot: sp|Q94JZ8|PUX7_ARATH Plant UBX domain-containing protein 7; TrEMBL-Plants: tr|I1MMM9|I1MMM9_SOYBN UBX domain-containing protein; Found in the gene: LotjaGi4g1v0151000 LjG1.1_chr4 24873422 24881805 +
1 domain prediction
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LotjaGi4g1v0231200.1
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|A0A151TT74|A0A151TT74_CAJCA FAS-associated factor 2-B; Found in the gene: LotjaGi4g1v0231200 LjG1.1_chr4 54243216 54246067 +
1 domain prediction
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LotjaGi5g1v0199500.1
n.a. FAS-associated factor 2-B-like protein; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735104 49746530 +
1 domain prediction
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LotjaGi5g1v0199500.2
n.a. FAS-associated factor 2-B; TAIR: AT4G10790.1 UBX domain-containing protein; Swiss-Prot: sp|Q9M0N1|PUX10_ARATH Plant UBX domain-containing protein 10; TrEMBL-Plants: tr|I1NIG8|I1NIG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0199500 LjG1.1_chr5 49735424 49745816 +
1 domain prediction
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