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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31232
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 80 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0107079.1
n.a. Self-incompatibility protein [Medicago truncatula] gi|357520159|ref|XP_003630368.1| chr0 46129722 46130153 +
1 domain prediction
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Lj0g3v0308189.1
n.a. self-incompatibility S1 family protein [Arabidopsis thaliana] gi|145334173|ref|NP_001078467.1| chr0 160890146 160890493 +
1 domain prediction
 –
Lj3g3v2995840.1
n.a. Self-incompatibility protein [Medicago truncatula] gi|357497235|ref|XP_003618906.1| chr3 37280282 37280821 -
1 domain prediction
 –
Lj4g3v2215620.1
n.a. Uncharacterized protein TCM_018793 [Theobroma cacao] gi|508711796|gb|EOY03693.1| chr4 30818566 30819357 +
1 domain prediction
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Lj4g3v2376310.1
n.a. Self-incompatibility protein [Medicago truncatula] gi|357497235|ref|XP_003618906.1| chr4 32957269 32957593 +
1 domain prediction
 –
Lj4g3v2603820.1
n.a. Self-incompatibility protein [Medicago truncatula] gi|357520159|ref|XP_003630368.1| chr4 34939505 34939909 +
1 domain prediction
 –
Lj4g3v2846130.1
n.a. S1 self-incompatibility protein [Medicago truncatula] gi|357520171|ref|XP_003630374.1| chr4 38026866 38027342 +
1 domain prediction
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LotjaGi1g1v0206600.1
n.a. Self-incompatibility protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3T4U2|I3T4U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206600 LjG1.1_chr1 45023816 45024743 -
2 domain predictions
 –
LotjaGi1g1v0206700.1
n.a. Self-incompatibility protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3T4U2|I3T4U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206700 LjG1.1_chr1 45030997 45031645 -
2 domain predictions
 –
LotjaGi1g1v0232400.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072VV56|A0A072VV56_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi1g1v0232400 LjG1.1_chr1 54620559 54621765 +
2 domain predictions
 –
LotjaGi1g1v0232500.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072VIX6|A0A072VIX6_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi1g1v0232500 LjG1.1_chr1 54661729 54662216 +
2 domain predictions
 –
LotjaGi1g1v0234400.1
n.a. Self-incompatibility protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3T4U2|I3T4U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0234400 LjG1.1_chr1 55136732 55137426 +
2 domain predictions
 –
LotjaGi1g1v0297000.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072VIX6|A0A072VIX6_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi1g1v0297000 LjG1.1_chr1 71949060 71949549 -
2 domain predictions
 –
LotjaGi1g1v0446300.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT3G24060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0446300 LjG1.1_chr1 94522774 94523387 -
2 domain predictions
 –
LotjaGi1g1v0449700.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SJB6|I3SJB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0449700 LjG1.1_chr1 94885897 94886484 -
2 domain predictions
 –
LotjaGi1g1v0449900.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0449900 LjG1.1_chr1 94907998 94908952 -
2 domain predictions
 –
LotjaGi1g1v0450100.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT3G26880.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0450100 LjG1.1_chr1 94918410 94918993 -
2 domain predictions
 –
LotjaGi1g1v0476000.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0476000 LjG1.1_chr1 98708315 98708857 -
2 domain predictions
 –
LotjaGi1g1v0476100_LC.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A151TB01|A0A151TB01_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0476100_LC LjG1.1_chr1 98718160 98718645 -
2 domain predictions
 –
LotjaGi1g1v0476200_LC.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G24975.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A151TAZ7|A0A151TAZ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0476200_LC LjG1.1_chr1 98735717 98736127 +
2 domain predictions
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LotjaGi1g1v0640900.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT3G17080.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|P49084|GPA1_SOYBN Guanine nucleotide-binding protein alpha-1 subunit; TrEMBL-Plants: tr|A0A072VKC6|A0A072VKC6_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi1g1v0640900 LjG1.1_chr1 119802765 119803229 -
2 domain predictions
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LotjaGi1g1v0642300_LC.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0642300_LC LjG1.1_chr1 119964373 119964792 -
2 domain predictions
 –
LotjaGi1g1v0677400.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SJB6|I3SJB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0677400 LjG1.1_chr1 124409062 124409628 -
2 domain predictions
 –
LotjaGi1g1v0677500.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SJB6|I3SJB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0677500 LjG1.1_chr1 124417821 124418375 -
2 domain predictions
 –
LotjaGi1g1v0708300.1
n.a. Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708300 LjG1.1_chr1 127669279 127669823 +
2 domain predictions
 –
LotjaGi1g1v0708400.1
n.a. Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708400 LjG1.1_chr1 127677956 127678499 +
2 domain predictions
 –
LotjaGi1g1v0708500.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT3G24060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708500 LjG1.1_chr1 127687021 127687648 +
2 domain predictions
 –
LotjaGi1g1v0708600.1
n.a. Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708600 LjG1.1_chr1 127692755 127693374 +
2 domain predictions
 –
LotjaGi1g1v0708700.1
n.a. Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708700 LjG1.1_chr1 127701201 127701740 +
2 domain predictions
 –
LotjaGi2g1v0097400.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072VKC6|A0A072VKC6_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi2g1v0097400 LjG1.1_chr2 31837767 31838337 +
2 domain predictions
 –
LotjaGi2g1v0102300.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0102300 LjG1.1_chr2 34167860 34168541 +
2 domain predictions
 –
LotjaGi2g1v0112400.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0112400 LjG1.1_chr2 40945881 40946439 -
2 domain predictions
 –
LotjaGi2g1v0127800.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SJB6|I3SJB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0127800 LjG1.1_chr2 46906090 46906643 +
2 domain predictions
 –
LotjaGi2g1v0214400.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0214400 LjG1.1_chr2 66465323 66465777 +
2 domain predictions
 –
LotjaGi2g1v0368000.1
n.a. Self-incompatibility protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S7W1|I3S7W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0368000 LjG1.1_chr2 86562904 86563447 -
2 domain predictions
 –
LotjaGi2g1v0448200.1
n.a. Leguminosin group486 secreted peptide; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|A8F448|ARGC_PSELT N-acetyl-gamma-glutamyl-phosphate reductase; TrEMBL-Plants: tr|I3S4H0|I3S4H0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0448200 LjG1.1_chr2 94202596 94203230 +
2 domain predictions
 –
LotjaGi3g1v0024500.1
n.a. Self-incompatibility protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S7W1|I3S7W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0024500 LjG1.1_chr3 2708434 2709063 +
2 domain predictions
 –
LotjaGi3g1v0077800.1
n.a. Plant self-incompatibility protein S1 family protein; TAIR: AT1G28305.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SJB6|I3SJB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0077800 LjG1.1_chr3 8591678 8592302 -
2 domain predictions
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LotjaGi3g1v0148000.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G24975.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|A0A072VKC6|A0A072VKC6_MEDTR Leguminosin group486 secreted peptide; Found in the gene: LotjaGi3g1v0148000 LjG1.1_chr3 19921001 19921465 -
2 domain predictions
 –
LotjaGi3g1v0174300.1
n.a. Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0174300 LjG1.1_chr3 24139793 24140265 -
2 domain predictions
 –
LotjaGi3g1v0211400.1
n.a. Self-incompatibility protein; TAIR: AT3G24060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S7W1|I3S7W1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0211400 LjG1.1_chr3 31666417 31667048 +
2 domain predictions
 –
LotjaGi3g1v0248300.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|Q9Y5H1|PCDG2_HUMAN Protocadherin gamma-A2; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0248300 LjG1.1_chr3 41207231 41207704 -
2 domain predictions
 –
LotjaGi3g1v0313200.1
n.a. Leguminosin group486 secreted peptide; TAIR: AT3G16970.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|F8QQ74|NAAC_BRASZ Probable 2-oxo-3-(5-oxofuran-2-ylidene)propanoate lactonase; TrEMBL-Plants: tr|I3S4H0|I3S4H0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0313200 LjG1.1_chr3 66195357 66195914 +
2 domain predictions
 –
LotjaGi3g1v0377000.1
n.a. Self-incompatibility protein; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3T4U2|I3T4U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0377000 LjG1.1_chr3 76985380 76985937 -
2 domain predictions
 –
LotjaGi4g1v0064500.1
n.a. Leguminosin group486 secreted peptide; TAIR: AT3G16970.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S4H0|I3S4H0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0064500 LjG1.1_chr4 8069381 8069937 +
2 domain predictions
 –
LotjaGi4g1v0125500.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0125500 LjG1.1_chr4 18265724 18305408 -
2 domain predictions
 –
LotjaGi4g1v0125500.3
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0125500 LjG1.1_chr4 18267808 18304572 -
2 domain predictions
 –
LotjaGi4g1v0142200_LC.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|P39374|YJIC_ECOLI Uncharacterized protein YjiC; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0142200_LC LjG1.1_chr4 21927709 21928088 -
2 domain predictions
 –
LotjaGi4g1v0143700.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0143700 LjG1.1_chr4 22638635 22639259 -
2 domain predictions
 –
LotjaGi4g1v0143900.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0143900 LjG1.1_chr4 22738815 22739407 -
2 domain predictions
 –