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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0476000 |
| Transcript ID | LotjaGi1g1v0476000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant self-incompatibility protein S1 family; TAIR: AT5G12060.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0476000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98708315..98708857) extracted from Lotus japonicus Gifu genome v1.2.
TCACAATCAAAAAATATCAATATTGCTACAATGTCTCTAATCTTTAGAAGTGTTCTTTTGCTTTCCTTGCTTGTGCTGGC ATCATGTCACGACTCTGAAACAAATTGTTGGATTTGTAAAACTAAAAAAACACTTGTGAGGGTCACAAATACCTTGTCTG GGAATCTGGATCTAACCCTTCATTGCAAATCTGGAGATGATGATCTTGGAGAGAAGCATATGCCTCCGGGGACTTCCGTT GAATGGAGTTTTAAAGTCAACTTTGCTTTCACAACACTTTTTCATTGTACCTTTCAATGGGAAAATGTCACAAAAAGGTT CGATATATACAAAGCAGAAAGAGATGAGCCCGAAAAATTTCTCTCTTGGAGTATAAAACAGAATGGACCATGTGTGGCTG GAACTCCGAAATCAGCCCCCCTAAAATTTATTTGTTATCCATGGAACAAATGATTAGAAATAGTTTTGTGTGATATCAAT ATGTATTTTAAATGATGAGGCTGAATTAATATGAATCAAGTTTAAAATAAAATGGCATTCATT
CDS sequence (LotjaGi1g1v0476000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTAATCTTTAGAAGTGTTCTTTTGCTTTCCTTGCTTGTGCTGGCATCATGTCACGACTCTGAAACAAATTGTTG GATTTGTAAAACTAAAAAAACACTTGTGAGGGTCACAAATACCTTGTCTGGGAATCTGGATCTAACCCTTCATTGCAAAT CTGGAGATGATGATCTTGGAGAGAAGCATATGCCTCCGGGGACTTCCGTTGAATGGAGTTTTAAAGTCAACTTTGCTTTC ACAACACTTTTTCATTGTACCTTTCAATGGGAAAATGTCACAAAAAGGTTCGATATATACAAAGCAGAAAGAGATGAGCC CGAAAAATTTCTCTCTTGGAGTATAAAACAGAATGGACCATGTGTGGCTGGAACTCCGAAATCAGCCCCCCTAAAATTTA TTTGTTATCCATGGAACAAATGA
Protein sequence (LotjaGi1g1v0476000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLIFRSVLLLSLLVLASCHDSETNCWICKTKKTLVRVTNTLSGNLDLTLHCKSGDDDLGEKHMPPGTSVEWSFKVNFAF TTLFHCTFQWENVTKRFDIYKAERDEPEKFLSWSIKQNGPCVAGTPKSAPLKFICYPWNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 19 | 19 | 5.0 | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 4 | 140 | 137 | 9.2E-35 | – | |
| PANTHER | 4 | 140 | 137 | 9.2E-35 | ||
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 140 | 121 | - | – | |
| Pfam | 36 | 138 | 103 | 3.8E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0476000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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