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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0708600 |
| Transcript ID | LotjaGi1g1v0708600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Self-incompatibility S1 family protein; TAIR: AT1G04645.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3S1R7|I3S1R7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0708600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127692755..127693374) extracted from Lotus japonicus Gifu genome v1.2.
CGAGCCCTGAATTTACTTATATATAGATAGATGTGACTGTTGGTATGGGGAGGTAAAAGTATAAGAGGTACGGTCATTAC TATCTCATAAAAATGTTGAAGGTGTTGGGTATAATACTTTCTGTATTGGTGATCATTACAACAGATGTGTTGATAGCACC GGTGCAAGGTTACACAAATTTCGCTGAGAGAACAGTGCGTGTAATAAATAATTTTACGGACAATAGTTTTACTCAGCTGC ATGTCCATTGTCATTCAAAGGATGATGATCTTGGCGACCATTATCTTTCCAAAGGACAATACACACAGTGGAAATTCGTT GATAATTTTTGGGGTACTACTTTGTTTTGGTGTGACTTTGCATGGAACAATGTGCAAAAGAGTTTTAGAGTTTATGGTAC CAAATATGATGATGCGCGTGGAGAATTTTGCTATCTAGCTATTAAAGAAGATGGGGCATATTTTTACGATGGATTCAAAT ACTGGAATAAGATGATCCCATGGTGATTCTCCAGACCATTATAGTTTAATAGCTGGATAAAAGCTAGTAAGAATTGCGAG TCATGTTATATAAATAAATGTACTACTTTATATATTTTATTAATAAAATGATGTTTTCTT
CDS sequence (LotjaGi1g1v0708600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAGGTGTTGGGTATAATACTTTCTGTATTGGTGATCATTACAACAGATGTGTTGATAGCACCGGTGCAAGGTTA CACAAATTTCGCTGAGAGAACAGTGCGTGTAATAAATAATTTTACGGACAATAGTTTTACTCAGCTGCATGTCCATTGTC ATTCAAAGGATGATGATCTTGGCGACCATTATCTTTCCAAAGGACAATACACACAGTGGAAATTCGTTGATAATTTTTGG GGTACTACTTTGTTTTGGTGTGACTTTGCATGGAACAATGTGCAAAAGAGTTTTAGAGTTTATGGTACCAAATATGATGA TGCGCGTGGAGAATTTTGCTATCTAGCTATTAAAGAAGATGGGGCATATTTTTACGATGGATTCAAATACTGGAATAAGA TGATCCCATGGTGA
Protein sequence (LotjaGi1g1v0708600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKVLGIILSVLVIITTDVLIAPVQGYTNFAERTVRVINNFTDNSFTQLHVHCHSKDDDLGDHYLSKGQYTQWKFVDNFW GTTLFWCDFAWNNVQKSFRVYGTKYDDARGEFCYLAIKEDGAYFYDGFKYWNKMIPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 135 | 135 | 4.3E-36 | ||
| PANTHER | 1 | 135 | 135 | 4.3E-36 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 16 | 26 | 11 | - | – | |
| Phobius | 27 | 137 | 111 | - | – | |
| Pfam | 34 | 137 | 104 | 4.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0708600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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