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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31458:SF2
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.019s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0216869.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 110216663 110221447 +
1 domain prediction
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Lj0g3v0255159.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 132473252 132476090 +
1 domain prediction
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Lj0g3v0326959.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502154756|ref|XP_004509821.1| chr0 170925405 170926553 -
1 domain prediction
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Lj1g3v0411530.1
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502133928|ref|XP_004501939.1| chr1 4838608 4841247 +
1 domain prediction
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Lj1g3v0411530.2
n.a. PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Cicer arietinum] gi|502133928|ref|XP_004501939.1| chr1 4838667 4841247 +
1 domain prediction
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Lj2g3v1402730.1
n.a. PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like isoform X1 [Cicer arietinum] gi|502169784|ref|XP_004514684.1| chr2 22127518 22129694 -
1 domain prediction
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LotjaGi2g1v0320200.1
n.a. Polygalacturonase non-catalytic protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|I1JC23|I1JC23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79512698 79515635 -
1 domain prediction
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LotjaGi2g1v0320200.2
n.a. Polygalacturonase non-catalytic protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|I1JC23|I1JC23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79512804 79515588 -
1 domain prediction
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LotjaGi2g1v0320200.3
n.a. BURP domain RD22-like protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|Q40161|GP1_SOLLC Polygalacturonase-1 non-catalytic subunit beta; TrEMBL-Plants: tr|G7K1D9|G7K1D9_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi2g1v0320200 LjG1.1_chr2 79513189 79513668 -
1 domain prediction
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LotjaGi4g1v0165800.1
n.a. Polygalacturonase non-catalytic subunit protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|A0A072TRI5|A0A072TRI5_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi4g1v0165800 LjG1.1_chr4 31427593 31430305 -
1 domain prediction
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