Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0320200 |
| Transcript ID | LotjaGi2g1v0320200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain RD22-like protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|Q40161|GP1_SOLLC Polygalacturonase-1 non-catalytic subunit beta; TrEMBL-Plants: tr|G7K1D9|G7K1D9_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi2g1v0320200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79513189..79513668) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAAGATGATGAGGGATTCACTGCAAGAGTGTGAGAGAGTCCCTAGCCGGGGTGAGACCAAGCGGTGTGTGGGGTC CATTGAGGATATGGTTGATTTCGCCACCTCTGTTCTCGGCCGCAATGTGGTGGTGAGAACCACCGAGAATGTAAACGGGT CGAACAAGAAAGTGATGGTGGGTCGGGTTCAAGGGGTCAACGGTGGGAAGGTGACCCGGTCGGTTTCTTGCCACCAGAGC TTGTTTCCTTATCTTCTCTACTACTGTCACTCTCTTCCTAAGGTTCGGGTCTACCAAGCGGATCTTCTTGACCCGAATAC CAAGGCCAAGATCAACCATGGTGTTGCTGTTTGTCATGTGGATACCTCTGATTGGAGCCCCACCCATGGAGCTTTTCTTT CTCTCGGGTCGGGTCCGGGTCGGATTGAGGTTTGTCACTGGATCTTTGAGAATGATATGAGCTGGGCTACTGCTGATTGA
CDS sequence (LotjaGi2g1v0320200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGATGATGAGGGATTCACTGCAAGAGTGTGAGAGAGTCCCTAGCCGGGGTGAGACCAAGCGGTGTGTGGGGTC CATTGAGGATATGGTTGATTTCGCCACCTCTGTTCTCGGCCGCAATGTGGTGGTGAGAACCACCGAGAATGTAAACGGGT CGAACAAGAAAGTGATGGTGGGTCGGGTTCAAGGGGTCAACGGTGGGAAGGTGACCCGGTCGGTTTCTTGCCACCAGAGC TTGTTTCCTTATCTTCTCTACTACTGTCACTCTCTTCCTAAGGTTCGGGTCTACCAAGCGGATCTTCTTGACCCGAATAC CAAGGCCAAGATCAACCATGGTGTTGCTGTTTGTCATGTGGATACCTCTGATTGGAGCCCCACCCATGGAGCTTTTCTTT CTCTCGGGTCGGGTCCGGGTCGGATTGAGGTTTGTCACTGGATCTTTGAGAATGATATGAGCTGGGCTACTGCTGATTGA
Protein sequence (LotjaGi2g1v0320200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKMMRDSLQECERVPSRGETKRCVGSIEDMVDFATSVLGRNVVVRTTENVNGSNKKVMVGRVQGVNGGKVTRSVSCHQS LFPYLLYYCHSLPKVRVYQADLLDPNTKAKINHGVAVCHVDTSDWSPTHGAFLSLGSGPGRIEVCHWIFENDMSWATAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 6.0E-101 | – | |
| PANTHER | 1 | 159 | 159 | 6.0E-101 | – | |
| ProSiteProfiles | 1 | 158 | 158 | 57.479 | ||
| SMART | 1 | 158 | 158 | 5.6E-70 | ||
| Pfam | 1 | 156 | 156 | 2.7E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…