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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0165800 |
| Transcript ID | LotjaGi4g1v0165800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase non-catalytic subunit protein; TAIR: AT1G70370.1 polygalacturonase 2; Swiss-Prot: sp|P92990|PGL3_ARATH Polygalacturonase 1 beta-like protein 3; TrEMBL-Plants: tr|A0A072TRI5|A0A072TRI5_MEDTR Polygalacturonase non-catalytic protein; Found in the gene: LotjaGi4g1v0165800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:31427593..31430305) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTACACCTCTCGGGACTAATATAAATACGTGCATACAACACAACAAAACCCGCCAGCATTCTCATTTCTTAACACTA GCTCTATCTTCCTTTTCTCCCTTCTCTCACACTCCTCATGAACAAGAAGGATTAAATAAAAAATAAAAATAAAAACAAAT GAAAGTGGAATTAAATATGCACAATAATAACACGCACAAACAAGTAATGATCATCACTCACAGGAGCAGCCTCTTTCTCC TTATCCTTCTTCTCTCCACATTCTGTGTAAGTGCAGCAAAAGTTTTTAGTTCTCTTATTATTATTTATTAATTCATTATA GTTGTTTAACTGCTTAATTGCTTTGGATTTTGATACATTCATATTTCTTGTCTCTATTTGAGTATTTGCTCTTCTTTATC TGTTTTTTTCTTAACTATCACATCAACTACATATCATATAAATTAAACTAATTTTCTCGCATTTTTCATTTCCATCTGTG AAGATGACATTTAAGTTTAAAGATAAATTTTTCCAACTGCTTTATCTGTGTTTTCCCTAATGTTTCAACAACGCACAGGT TGGTTTTGCTGTTGAAGATGGAGAAGCAGAAGCGCAGAAGCAAAACCCGTTCACACCAAAAGCATTCGTGATCCGCTACT GGGACAGAGCGATCTCCAACAAATTGCCAAAGTCATCCTTCCTCCTCTCCAAGGCGTCACCACTGACCGCCTCCGACGCC GCCACCTACGCCACCCTCGCCGCCGCCAACACACTTTCCACTCGCCTCCCGGAGTTCTGTTCCGCCGCGCACCTCCTCTG CTTCCCGGAGGTGTCCCCCAGCCTCGACAACCACCCAAAGGACTCCGCCTTCTCCGTCTACAACGACGGCCAGAACTTCA CAAACTACGGCACCGACCGACCCGACGGCCTCGACTCCTTCAAGAACTACTCCAACGGTTTCTTCAATACTCCCGTCAAC GACTTCCGCCGCTACAGCCGTGACTCCGCCGGCCACAATGAAACCTTCACCAGCTACGGCGACGGCAACAACGTCGTCGA CCAGAGCTTCCACACTTACGGCACCAACACCGCCGGCGGCGCCGGCGACTTCAAATCATACGGCGCCAACTCCAACGTCC CCAACCTCGGATTCACCACCTACTCCACCGACGGAGTCGGCAGGGAGCAAAAATTCTCCCAATACAGCGAAAACGGTAAC GCCGGCGACCAGAGTTTTACCAGCTACGGCAAAGAATCGCTCGGCGCCGCCAACGACTTCTCCGGCTACGGCACAAACTC CAACGTCGCCAGTTCCGGATTCTCAAACTACGCTGAGAAAGGCACCAGCGCCAAGGACACGTTCACGAACTACGGCGTGA ACATGAACAACCCCACCGAGACGTTCAAGAACTACGCCAAGGACAGCGTCTTCGCAGCCGAGAAATTCTCAAACTACCGT GACCAGGCGAACGTCGGCGCCGACTCGTTCCAGTCATACGCCGAGGGCGCACGAGGCGGCGATCCGGTGGAATTCAAGAA TTATGGGAAGTCATTCAATGAAGGAACCGACACTTTCAAAGGATACGCCAAAGGAGCAGACATTGATCAGAAGGTTAACT TCAAGGGCTATGGTGTCAATAACACCTTCAAAGATTACTCCAAACATGGCATTTCCTTTGCTGGTTATACCAAACGCTCA TCCAAACAGAGCCTTACTGGAAATTTGGCAAAGAAATGGGTTGAACCTGGGAAGTTCTTTCGTGAGAGGATGCTGAAATC AGGGACGGTTATTCCCATGCCTGATGTAACTGACAAAATGCCCAAAAGGTCGTTTTTGCCTCGTTCCATTTTGACCAAAT TGCCCTTTAAATCTTCGGATCTGAAACGCGTGTTCAGGATCTCTGATAATTCTTCCATGGATAAAATGATTGTTGATTCG GTCGGTGAGTGCGGGAGGGCACCGAGCGCGGGTGAGACCAAACGTTGCGTGGGCTCGATTGAGGACATGATTGACTTTGC CGCTTCAGTTTTGGGCCGCAACGTGACAGTTCGGGCAACCGAGAATGTTAATGGGTCGGGGAAGACCGTGATGGTGGGTC GGGTTTATGGGGTGAATGGTGGGAAAGTAACCAAGTCGATGTCGTGTCACCAGAGCTTGTTTCCTTATTTGCTTTACTAC TGCCACTCGGTTCCTAAGGTTCGGGTCTATGAAGCAGATCTTTTAAACCCGGTTACAAAGGCTAAGATTAACCACGGAGT TGCCATCTGTCACTTGGACACCACTGCTTGGAGCCCCACTCATGGTGCGTTCATGGCTCTTGGGTCCGGTCCAGGTCGGA TTGAAGTGTGTCACTGGATCTTTGAGAATGACATGACCTGGACAACTGCTGATTGAGAAAGCCTAACAAGCTAATTAAGC AGGGTCAGAAATAAATGGTGTTGTTGTTGTTGCAATTATCTACTAAGTGGGAGCTTCTCTGAAGTGTGAATTATCCAGCT TCCTTGCGAATGAAATAATTAATATATTGGAAGCCAAATAAATCAAGTGTCTATTTATTTGCACTTTGTTTGTTATCTTG TGAGAAGAAAAATTCGATAACTTTGTGAATCAAAAAAAATATTTGGTTGCAGTGGAATTAAGAAGGAGGATTGAATTATT GTTAATTTTTGTCTATCTCATTGGACCAGTAAATAAAAATTGGGAATTAAAAATGCTTAAATTAAATAATAAA
CDS sequence (LotjaGi4g1v0165800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTGGAATTAAATATGCACAATAATAACACGCACAAACAAGTAATGATCATCACTCACAGGAGCAGCCTCTTTCT CCTTATCCTTCTTCTCTCCACATTCTGTGTTGGTTTTGCTGTTGAAGATGGAGAAGCAGAAGCGCAGAAGCAAAACCCGT TCACACCAAAAGCATTCGTGATCCGCTACTGGGACAGAGCGATCTCCAACAAATTGCCAAAGTCATCCTTCCTCCTCTCC AAGGCGTCACCACTGACCGCCTCCGACGCCGCCACCTACGCCACCCTCGCCGCCGCCAACACACTTTCCACTCGCCTCCC GGAGTTCTGTTCCGCCGCGCACCTCCTCTGCTTCCCGGAGGTGTCCCCCAGCCTCGACAACCACCCAAAGGACTCCGCCT TCTCCGTCTACAACGACGGCCAGAACTTCACAAACTACGGCACCGACCGACCCGACGGCCTCGACTCCTTCAAGAACTAC TCCAACGGTTTCTTCAATACTCCCGTCAACGACTTCCGCCGCTACAGCCGTGACTCCGCCGGCCACAATGAAACCTTCAC CAGCTACGGCGACGGCAACAACGTCGTCGACCAGAGCTTCCACACTTACGGCACCAACACCGCCGGCGGCGCCGGCGACT TCAAATCATACGGCGCCAACTCCAACGTCCCCAACCTCGGATTCACCACCTACTCCACCGACGGAGTCGGCAGGGAGCAA AAATTCTCCCAATACAGCGAAAACGGTAACGCCGGCGACCAGAGTTTTACCAGCTACGGCAAAGAATCGCTCGGCGCCGC CAACGACTTCTCCGGCTACGGCACAAACTCCAACGTCGCCAGTTCCGGATTCTCAAACTACGCTGAGAAAGGCACCAGCG CCAAGGACACGTTCACGAACTACGGCGTGAACATGAACAACCCCACCGAGACGTTCAAGAACTACGCCAAGGACAGCGTC TTCGCAGCCGAGAAATTCTCAAACTACCGTGACCAGGCGAACGTCGGCGCCGACTCGTTCCAGTCATACGCCGAGGGCGC ACGAGGCGGCGATCCGGTGGAATTCAAGAATTATGGGAAGTCATTCAATGAAGGAACCGACACTTTCAAAGGATACGCCA AAGGAGCAGACATTGATCAGAAGGTTAACTTCAAGGGCTATGGTGTCAATAACACCTTCAAAGATTACTCCAAACATGGC ATTTCCTTTGCTGGTTATACCAAACGCTCATCCAAACAGAGCCTTACTGGAAATTTGGCAAAGAAATGGGTTGAACCTGG GAAGTTCTTTCGTGAGAGGATGCTGAAATCAGGGACGGTTATTCCCATGCCTGATGTAACTGACAAAATGCCCAAAAGGT CGTTTTTGCCTCGTTCCATTTTGACCAAATTGCCCTTTAAATCTTCGGATCTGAAACGCGTGTTCAGGATCTCTGATAAT TCTTCCATGGATAAAATGATTGTTGATTCGGTCGGTGAGTGCGGGAGGGCACCGAGCGCGGGTGAGACCAAACGTTGCGT GGGCTCGATTGAGGACATGATTGACTTTGCCGCTTCAGTTTTGGGCCGCAACGTGACAGTTCGGGCAACCGAGAATGTTA ATGGGTCGGGGAAGACCGTGATGGTGGGTCGGGTTTATGGGGTGAATGGTGGGAAAGTAACCAAGTCGATGTCGTGTCAC CAGAGCTTGTTTCCTTATTTGCTTTACTACTGCCACTCGGTTCCTAAGGTTCGGGTCTATGAAGCAGATCTTTTAAACCC GGTTACAAAGGCTAAGATTAACCACGGAGTTGCCATCTGTCACTTGGACACCACTGCTTGGAGCCCCACTCATGGTGCGT TCATGGCTCTTGGGTCCGGTCCAGGTCGGATTGAAGTGTGTCACTGGATCTTTGAGAATGACATGACCTGGACAACTGCT GATTGA
Protein sequence (LotjaGi4g1v0165800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVELNMHNNNTHKQVMIITHRSSLFLLILLLSTFCVGFAVEDGEAEAQKQNPFTPKAFVIRYWDRAISNKLPKSSFLLS KASPLTASDAATYATLAAANTLSTRLPEFCSAAHLLCFPEVSPSLDNHPKDSAFSVYNDGQNFTNYGTDRPDGLDSFKNY SNGFFNTPVNDFRRYSRDSAGHNETFTSYGDGNNVVDQSFHTYGTNTAGGAGDFKSYGANSNVPNLGFTTYSTDGVGREQ KFSQYSENGNAGDQSFTSYGKESLGAANDFSGYGTNSNVASSGFSNYAEKGTSAKDTFTNYGVNMNNPTETFKNYAKDSV FAAEKFSNYRDQANVGADSFQSYAEGARGGDPVEFKNYGKSFNEGTDTFKGYAKGADIDQKVNFKGYGVNNTFKDYSKHG ISFAGYTKRSSKQSLTGNLAKKWVEPGKFFRERMLKSGTVIPMPDVTDKMPKRSFLPRSILTKLPFKSSDLKRVFRISDN SSMDKMIVDSVGECGRAPSAGETKRCVGSIEDMIDFAASVLGRNVTVRATENVNGSGKTVMVGRVYGVNGGKVTKSMSCH QSLFPYLLYYCHSVPKVRVYEADLLNPVTKAKINHGVAICHLDTTAWSPTHGAFMALGSGPGRIEVCHWIFENDMTWTTA D
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| TMHMM | 19 | 41 | 23 | - | – | |
| PANTHER | 23 | 641 | 619 | 1.6E-293 | – | |
| PANTHER | 23 | 641 | 619 | 1.6E-293 | – | |
| Phobius | 25 | 36 | 12 | - | – | |
| Phobius | 37 | 40 | 4 | - | – | |
| Phobius | 41 | 641 | 601 | - | – | |
| SMART | 427 | 640 | 214 | 2.8E-116 | ||
| ProSiteProfiles | 429 | 640 | 212 | 65.156 | ||
| Pfam | 429 | 638 | 210 | 5.1E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0165800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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