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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR33088
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 20 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.018s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0091049.1
n.a. PREDICTED: periaxin-like [Cicer arietinum] gi|502087002|ref|XP_004488396.1| chr0 37632586 37634026 +
1 domain prediction
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Lj0g3v0091059.1
n.a. n.a. chr0 37632861 37633648 -
1 domain prediction
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Lj2g3v1155510.2
n.a. n.a. chr2 18285429 18290413 +
1 domain prediction
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Lj2g3v1155510.3
n.a. n.a. chr2 18285429 18290413 +
1 domain prediction
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Lj2g3v1155520.1
n.a. PREDICTED: IgA FC receptor-like [Glycine max] gi|356552286|ref|XP_003544499.1| chr2 18289250 18291094 -
1 domain prediction
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Lj2g3v1560870.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK2-like [Cicer arietinum] gi|502142195|ref|XP_004504838.1| chr2 24923231 24924219 +
1 domain prediction
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Lj3g3v0708170.1
n.a. PREDICTED: periaxin-like [Glycine max] gi|356577686|ref|XP_003556955.1| chr3 7646543 7646727 -
1 domain prediction
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Lj6g3v2193410.1
n.a. PREDICTED: mucin-2-like [Cicer arietinum] gi|502142197|ref|XP_004504839.1| chr6 25353093 25353925 -
1 domain prediction
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Lj6g3v2193570.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK2-like [Cicer arietinum] gi|502142195|ref|XP_004504838.1| chr6 25402591 25403447 +
1 domain prediction
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LotjaGi2g1v0275400.1
n.a. Leguminosin group485 secreted peptide; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0275400 LjG1.1_chr2 74749378 74752392 +
1 domain prediction
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LotjaGi2g1v0275400.2
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0275400 LjG1.1_chr2 74750946 74752240 +
1 domain prediction
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LotjaGi2g1v0278000.1
n.a. Leguminosin group485 secreted peptide; TAIR: AT5G09520.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|P27951|BAG_STRAG IgA FC receptor; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74979930 74991335 -
1 domain prediction
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LotjaGi2g1v0278000.2
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|O55103|PRAX_MOUSE Periaxin; TrEMBL-Plants: tr|A0A072UVS4|A0A072UVS4_MEDTR Leguminosin group485 secreted peptide; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74979930 74991335 -
1 domain prediction
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LotjaGi2g1v0278000.3
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|A0A0D3AIA7|A0A0D3AIA7_BRAOL Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985438 74991325 -
1 domain prediction
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LotjaGi2g1v0278000.4
n.a. Leguminosin group485 secreted peptide; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985438 74991325 -
1 domain prediction
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LotjaGi2g1v0278000.5
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|E1BM58|PRAX_BOVIN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985438 74991325 -
1 domain prediction
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LotjaGi2g1v0278000.6
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|A0A072UUW0|A0A072UUW0_MEDTR Leguminosin proline-rich group669 secreted peptide; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985669 74991310 -
1 domain prediction
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LotjaGi2g1v0278000.7
n.a. Leguminosin group485 secreted peptide; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985669 74991310 -
1 domain prediction
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LotjaGi2g1v0278000.8
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q63425|PRAX_RAT Periaxin; TrEMBL-Plants: tr|A0A072UUW0|A0A072UUW0_MEDTR Leguminosin proline-rich group669 secreted peptide; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985919 74991184 -
1 domain prediction
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LotjaGi2g1v0278000.9
n.a. IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|A0A072UVS4|A0A072UVS4_MEDTR Leguminosin group485 secreted peptide; Found in the gene: LotjaGi2g1v0278000 LjG1.1_chr2 74985922 74991261 -
1 domain prediction
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