Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0275400 |
| Transcript ID | LotjaGi2g1v0275400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leguminosin group485 secreted peptide; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9BXM0|PRAX_HUMAN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0275400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74749378..74752392) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTAAAAAAATACTATTTCTTAAAAATTTAAGTTCAAACACTAAGTATGTGATGCAAGTGAACGTCTATGAAAAAACT ATATCTAGGGTGAGTTCTTTGTTTTGTCGTCAATCCTATCTATGTTTCTACGAGGGCCCAAGAACACGCTCATTCTTTAG CGTGCAATGGCTTTCTCTGATTGGGGCTCGCTCAAAAACCGGAGCTTGCTGTCTACTAAACGAGCCTTCACTGCCCGCTC GTCCCTATCTTTAATCTTAAGTAAAGTGAAGTCAAATCAATGAAGTGAACAACCCAACCTCTTTGTTTTTTCTAATAATT ACACAACTTCCAATAAATTTAACTTGATCCTCGAAGGATAGCTCATATGGTCGTAAGAGAGCTGAGAACATATAGCTTAT GGAGAGGAAGACCGGAGTTTAATCCTTGACCTTTCCTATGTAAAAATAAATAAATGTTAACTTGCCTTTTCGCAAACATT CGCTTCTCAAACTCCTCATCCCACGACGCCCTCTGACGTGCTTTACCAAACTGCTCTGTTCCCTCAAAGTTCAGATCAAC CACCAAAACCAGTATGGATATCTCAATGCCGCTTCTACCTTTTCTTGTTAATGTTTATTCATCTTTTCCTATCTTTTTTG TATTTGTTTTGATGACATGGAATTGGAATATTGAATGACAGTGATTGCTGGGAAGTCGATGATTAAGTTCGAGGGTGGGT ACACTGTGGAAGAAACCGTGTTTGTTGGAAGCAAGCTTCGAATTGAGCCTTATGCAGTTCAGGTGTAAGTAGCATTTATA GGACTTTATCCTAACTTTCTTTGTTTCCTATCTCACCAAGCATTCTACTTGATAAGCATGTTTGGATACAGACTTATTGG AGCTTTATCCACTAAAAAAATACTAGATAAGCTCCAATAAGTGCTTTTTGGTTTGCATCCATACAGGTTCAATATATCTT GCAAAAGTCAGTTTGTAGTTTGTACTATATTCCAGACCAGCCATCTAATCAAGTTTTAAATACTAAAAAGATTATGAGTA TGAAATATTAGTAGATTATCTACTCTCTGGGATTTGTAGATACAGAGGAATGGGATGGAGGGAATTGCAGTTGGGATAAG CCATGGCTTAAGTATGGAAATTGAAAAATGTTGATGATTTGGATGTAAAAGAGAAAACGCTATGCTTGGTTTTGCATGAA AAGCTCTTGAGAAGGTTTACTTATAGCATATATCTTAGAGATATCCAAGAAGTACTGCCATACTGGTATGGTTGATGAAC CAAATTTTGACTTTTCACATTAATTTTGTTTTTGGTTAACCTTCTTATCCATTGACAAGGAATTAGAAAGATTGCAAGCT AAGGATATCTAAGTGCTTAGGTTACCTTTTCCCTGAGAATATTGGCTTTCATATTAAAGGTTATTTTTTAATTAAAGGTC ATGAATTTGTCTTCATTCCCTTCTAATATAGATAGGTAAGTTGACCAACAACGGTGGCTCTAGTTAAATATTTGTTTATT GAGATACTGTATAGGTATGAAGTTGAACTAACAATGCTTACAACATCACACCAACTCACCCTGATTGTCCTTTTACACAA TTTTTTCTATAAAAGCCCCATAGATAACATCTGCAGACTACACTAGCAAAGCATATCAAAACCATTTGCAAGCAGAGATC TCCAACTCTTATTGATACTCCTGAAGTTCTAATCACCAGCTTGAATCAACCATGGCTTCCATCAGTTTGTCAACAATCAT CTTTCCATTTTTTGTTCTAACTTTGTTTTCAGCAAACAGCCACATGATGGTTGCCGGGGCACGCATTCTTTTGGAGTCAT CAGAGCCACATGTACCTCAGCTTCCCAAACCTGAGTTGCCTCTTCTGCAAAAGCCAGCCTTACCAGAAGTCCCTGAATTA CCTAAGCCAGAATTGCCAAAGCCTGAGCTACCTAAGGTTAATGTCCCTGAATTGCCAAAGCCAGAACTGCCTAAGGTCCC TGAGTTGGCAAAGCCTGAGCTGCCTAAGATCAATGTCCCAGAATTGCCAAAGCCTGAACTACCTAAGGTTAATGTTCCTG AATTGCCAAAGCCTGAGCTACCAGAATTTAAGGTCCCTGAACTTTCAAAACCTGAGCTACCTAAGCTTAATGTCCCTGAA TTGCCAAACCCAGAGATGCCTAAGGTCCCTGAGTTGCCAAAGCCTGAACTACCAAAGATCCATGTCCCTGAATTGCCAAA ACCAGAAATTCCTAAGGTCCCTGAATTGCCAAAGCCTGAGCTACCTAAGGTTAATGCTCCTGAATTTCCAAAAAGTGAGA TGCCTAAGGTTCCTGAGTTGCCAAAGCCTGAGCTACCTAAGATTAATGTTCCTGAATTGCCTAAACCTGAGATGCCTAAA GTCCCTGAAATTTCTAAAGCCATTCCAACCCCCATTAATCCTTAAGTTGGAACTTGGAATTATGCCTTATGCTGTCTTGT CTCTGGTCATATAGTTGGCTAGTGGCTACTATCCAGTGCCTAGCTCATGCTGTTTGATGGTGTGATATGATTTAATTTTC AATTCTATGTTCTTTGTTATAAGCTATATGTAAACAAGAGAGTGGTTGTCATGGTTTAGTATGAATCTTATCAAGAATTA GACATTGTGTTTATTTTGAGCTTGTTTAAATTGATTATACCACTCTATATTGATGTCATATCCTTCATGTGTAAGTCGTG AATTAAATAAGATTGTTATTTTTTCCCCTACCTAGATTTCTATGATTTTCAAATCCCAATTTAGCTTGAGCTGTTGCGTT GTTAGTTGATACGTTCAAGAAATCTGGTCTGCAACTTTAATTCAGCTTCCAAATTTCAATTGGATCATATACAGTTGATT TATAATTCCTGGGTTTAAATTGTAGGTTTCAAATAAGGATTTGTTCCTAACCACATGCTTTTCTACCCATATAGAAAATA GGAGTATAATCCTAAACCACACTTGATTAACCCATACCCGAAAAACATGATGAAG
CDS sequence (LotjaGi2g1v0275400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCATCAGTTTGTCAACAATCATCTTTCCATTTTTTGTTCTAACTTTGTTTTCAGCAAACAGCCACATGATGGT TGCCGGGGCACGCATTCTTTTGGAGTCATCAGAGCCACATGTACCTCAGCTTCCCAAACCTGAGTTGCCTCTTCTGCAAA AGCCAGCCTTACCAGAAGTCCCTGAATTACCTAAGCCAGAATTGCCAAAGCCTGAGCTACCTAAGGTTAATGTCCCTGAA TTGCCAAAGCCAGAACTGCCTAAGGTCCCTGAGTTGGCAAAGCCTGAGCTGCCTAAGATCAATGTCCCAGAATTGCCAAA GCCTGAACTACCTAAGGTTAATGTTCCTGAATTGCCAAAGCCTGAGCTACCAGAATTTAAGGTCCCTGAACTTTCAAAAC CTGAGCTACCTAAGCTTAATGTCCCTGAATTGCCAAACCCAGAGATGCCTAAGGTCCCTGAGTTGCCAAAGCCTGAACTA CCAAAGATCCATGTCCCTGAATTGCCAAAACCAGAAATTCCTAAGGTCCCTGAATTGCCAAAGCCTGAGCTACCTAAGGT TAATGCTCCTGAATTTCCAAAAAGTGAGATGCCTAAGGTTCCTGAGTTGCCAAAGCCTGAGCTACCTAAGATTAATGTTC CTGAATTGCCTAAACCTGAGATGCCTAAAGTCCCTGAAATTTCTAAAGCCATTCCAACCCCCATTAATCCTTAA
Protein sequence (LotjaGi2g1v0275400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASISLSTIIFPFFVLTLFSANSHMMVAGARILLESSEPHVPQLPKPELPLLQKPALPEVPELPKPELPKPELPKVNVPE LPKPELPKVPELAKPELPKINVPELPKPELPKVNVPELPKPELPEFKVPELSKPELPKLNVPELPNPEMPKVPELPKPEL PKIHVPELPKPEIPKVPELPKPELPKVNAPEFPKSEMPKVPELPKPELPKINVPELPKPEMPKVPEISKAIPTPINP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 113 | 113 | 2.5E-52 | – | |
| PANTHER | 1 | 113 | 113 | 2.5E-52 | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 18 | 13 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 237 | 207 | - | – | |
| MobiDBLite | 41 | 120 | 80 | - | – | |
| MobiDBLite | 43 | 64 | 22 | - | – | |
| MobiDBLite | 70 | 86 | 17 | - | – | |
| MobiDBLite | 101 | 118 | 18 | - | – | |
| PANTHER | 102 | 164 | 63 | 2.5E-52 | – | |
| PANTHER | 102 | 164 | 63 | 2.5E-52 | – | |
| MobiDBLite | 136 | 237 | 102 | - | – | |
| MobiDBLite | 140 | 154 | 15 | - | – | |
| PANTHER | 141 | 230 | 90 | 2.5E-52 | – | |
| PANTHER | 141 | 230 | 90 | 2.5E-52 | – | |
| MobiDBLite | 155 | 179 | 25 | - | – | |
| MobiDBLite | 204 | 221 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0275400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…