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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0278000 |
| Transcript ID | LotjaGi2g1v0278000.5 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | IgA FC receptor; TAIR: AT5G09530.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|E1BM58|PRAX_BOVIN Periaxin; TrEMBL-Plants: tr|I3T239|I3T239_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0278000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74985438..74991325) extracted from Lotus japonicus Gifu genome v1.2.
ATTATCTGATTAAGTTTTAAATAGTGGAAATATTATCAGTATGAAATATCAACAGATAAAATGCTAAGAATTCTCAACTC TTAAGGATTTGTGGATGCAGAGGAATAAGATGGAGCCTGGAGGGAATCACAGCTGTATAGGCCATCTCTTTTGTATGGAA GATATTGAAGATTTGGAGCAATTAGTAAGAGGCATAAACGTGTAAACAAGGATTTGCATGAAAAGCTTTTCAGAAGGTTT GGTTATATGTTAGAGATATGGAAGAAGTACTGGTATGGTTGATGAACCTAATTTTGACTTTTCTCATTAATAGTTTTTTT GTTAACCTTCTTATCTGTAGTCAAGGCATTAGAAAGTTTGCAAGCTGAAGGTATTTTGGTGTTCAGGTTACCTTTTTCAC TGAGAATATAGCTTTCATGATAAAAGGGCATTTTTTAATTCGAAGGTCATGATTTTGTCTTCATTCTCTTCTAATATAGA TAGGTAAGTTGACCAACAATGGCTCTAATCAATTTTCTGATGAGATACTATATAGGTAAGAAGTTGAACGAACAATGCTG ACAGTATCCCACCAACTCACCCTGATTGTCCTTTTACACAATTTTTTCTATAAAAGCCCCATAGATAACATCTGCAGACT ACACTAGCAAAGCATATCAAAACCATCATTTGCAAGCAGAGAGCTCCAACTCTTATTGATACTCCTGAAGTTCTAATCAC CAGCTTGAATCAACCATGGCTTCAAGCAGTTTGTCAACAATCATCTTTCCACTTTTGGTTCTAACTTTGTTGTCAGCAAA CAGCCACATAATGGTTGCCGGGGCACGCATTCTTTTAGAGTCAAAGCCTGTCTTGCCTGAAGTCCCTGAATTACCTAAGC CAGAATTGCCTAAGATCCCAGAATTTCCAAAACCAGAACTGCCTAAACTTCCTGAACTGCCAAAGCCTGAGCTACCAAAG GTTAATGTTCCTGAATTGCCAAAACCAGAATTGCCTAAGGTCCCTGAATTGCCAAAGCCTGAACTACCTAAGGTTCCTGA GTTGCCAAAGCCTGAACTACCTAAGGTTCCTGAGTTGCCAAAGCCTAATGTTCCTGAATTGCCAAAACCAGAATTGCCTA AGGTCCCTGAATTGCCAAAGCCTGAACTACCTAAGGTTCCTGAGTTGCCAAAGCCTGAACTACCTAAGGTTCCTGAGTTG CCAAAGCCTGAGCTACCCAAGGTTAATGTCCCTGAATTGCCAAAGCCTGAGGTACCAAAAGTTGAAGTCCCTGAATTGCC AAAACCTGAGCTGCCTAAGCTTAATGTCCCTGAATTGCCAAAACCAGAGATGCCTAAGGTCCCTGAGTTGCCAAAGCCTG AACTACCAAAGATCAATGTCCCTGAATTGCCAAAACCAGAAATTCCTAAGGTCCCTGAATTGCCAAAGCCTGAGCTACCT AAGGTTAATGTTCCTGAATTCCCAAAACCTGAGATGCCTAAGGTTCCTGAGTTGCCAAAGCCTGAGCTACCTAAGATTAA TGTCCCTGAATTTCCTAAAGCTATTCCAACAACCAGTCCTTAAGTTGGAATTATGCCATACGTCGTCTTGTCTCAGGTCA TATAGCTGGCAGTCCAGTGCCTAGTCCATGCTGTTTGATGGGAGTGATATGATATTATGATTTAATTTTCAGTACTGTTT GATTTGTTATAAGCTATAGTTACATGAGAGTGATTGTCATGGTTCAGTATGAACCTTACTAAGATTAGACATTATGTTTA GTTTGAGCTTGTTTAAATTGATTTTACCACTGCCTATTGCTGGTATCATATCCTTCATGTATAAGCAGTGAATTTAATAA GATTGCAATATTTTTTTTCATAGATTTCTATATTTCCAAGTTCTAATTTAGTTTGAGCTGTTATGTTATTACGTTCATGA AATGAAATGTGGTCTGCAACTCTGAATCCGCCTTCCCAATTTCAGTTGGGAAATCTTACTCTTAAAACAAGAAAGAAGAA TGATGTCCTTGGATCATTTAAAGATGATTTAATTTCTGAGTTTATTTGCATATATCAAATACTTAAGTAAACATTGATAC TATCTAATACATTAGTAGGAGTTGAGCCATGAGTTCTTGGACAACAAGCAAAGTTACAATCTGACTAACGTTTACACTGA TATTCTGAGGTGGTTGAATGGTATCTTGTGTAGCCAGCCACTCTTTTACTAATACAATGAGTGTGGATATTAAGTACAAA TTAATCATCAATGGGTTCTCTAACTTAATCCATGAGTTATAATCTCATTCTAGATTGATCAATAGTGTAATTCAAGTAAA AAATTGGGTGTAATTCTGAATATTAATTGAAGTGTTTGTTTGGATCCGCTTTAGTAGAATTAAGTGCGTGTTTGGACCAG CGTTAACAGAATTAAGCCTGTCCATAATGAATTGAGTCTTGTAAACGTGAGTTAAAGTGATGTGAATCATGTTAAGATAC CTTTAACAAAAACGTGATTTCCGTAAAAGAATAAATAAAACGTAGCCACATAACTTTTTTTTAGCAACCTCACATAATAA AACTTATCTATCTGTGTTGCCTCCAGCAGTAAAAAAGTTCAGTGTTCATAATGGTAGCTTTCCCTCTCTTCTTAGGCCCA ATGCCCCCATCCACAGAGGTTGTTCCTCGCCACCTTCTTTCTTTCTCAAACTTCATGGTTAATGGTTGGTTGGTTCTTTG AAATGGTGAGATAATGATTAGCACACTGATTCATATGCTTGGTTTGAAAGGGATTTGACAAGTTGATGAGAATTGAGCAC TTTTTTGCTTGTGCAATTTTATCTGTGATAGGTAATCTTTTACAGTAAAATCCAGATGCTTGCATAATCCACTACCATAA GTATATTATATTTCAACCAGTCATAATACTTGGAAAGCTGCAGCATGGTTTGATATGAATTTAAAGCTTGATGGAAAGGT AAAATTATATTACATGCCAGCATTATTAAATCAATATGGGCAGCCCAGAAACCAAGCATGAAAGATATTAAGAAGCCTTC TGCATTTTAAATTTGTATACAGGTCTAATAGTGAGAGCTTCGATTGTTGTCATTCCATCTCCCAATTATGCTATTGAGAC TATTTCAACCAGACAAGATACATCAGTACTAACATGTCTAGAAAGCTCTTCTTCCCTTTCAAATTTCTACTTAACTTTGT CATCACACACGAAATTGTGATCAGTCAGAATTGGGTGATGGTATCTTGGGCTATAATCATAGTTCTTCTTGGACTTTATG CTTAAGATTTTATCAACATGATCCTTGAAGATTGGGTAATGTCAATTATTAACATTTTGGTAAATACTGCAGAAGGCCAA AACTGTGTATACTCAATCGAAGCAACAATTAATTATCTTTAGTTTGTTTGAGTAAAAAACATCCACATTTAGGGTGCTAT GGTTTTATCCAAATTACATTTTCTATCATGTCATCTTTTATTTAGTAAATGTCTACTTGTGAGGTCGTAACATGTGCTGC CATTCTTATGATTTTGCTGGCAATGGGAATAGCAGTAATGATAGATGTGATAATAAATCATGTTCTGTCACTACAGCAGC AAATTGAGATCAGATTATTGTCACATATCCGTATTAGAGTTTTTGAAATGTAGTGGGACAGCAACAACACAAATCACAAA TAACTCAATAATAATACTAGACATTTGTATTTTGTAGGGTGGAAAAGTTACAAGATTTGAAGCAACTAATCAGAGGCATA AACGTGTAAAGAAAAGGCTATGCTTGGGTTTGCATGGAAAGCTTTTCAAAAGGTACTGATATGGTTGATTAACCTAACCT TTGACTTTTCTCATACATTCTCACAGAATACTTTACTAAGCTTTTTGGGGTTCTGAAGTTGAATCTAGTTTACTGACAAG GCATTAGAAAATTTGCAAGCTAAATAAAAATAGTTTTGGTTGGAAAAAATCTCTAGTAATCCTTGGTTGTGATGTTGCTT TGTCACTGAGAAAATTGGCTTTCATGGGTAAGTGGTATTTCTTATTTGGAAGGTCCAAAATACCTTCATAGTTTATTGCC TTCTAATGTAGATTGGTCAGTTGACCAACAACGTTTCTTATTTTGTTTGATGAGATACTATATAGGTAGGAAGTTGAACT AACAACACTTTCATTATCCCTCCAACTCACCCTGCTTGTCCAAATAGTACACAATTTCATCTATAAAAGCCCCATAGATA ACACCTGCAGAGCATATCAAAACCATTTGCAGAGAGTTCAAACTTCTATTGAACCTCCTGAAATTCTAGTCACCAGCTTG AATCAACAATGGCTTCCATCAGTTTGTCAACAATCATTTTTCCATTTTTGTATCTTACTTTGTTGTCAGCAAACAGCCCC ATAATGGTTGCCGGGGCACGCATTCTTTTAGAGTCGAAGCCTGTCTTACCTGAAGTCCCTGAATTACCTAAGCCAGAATT GCCTAAGATCCCAGAATTGCCAAAACCAGAACTGCCTAAACTTCCTGAATTGCCAAAGCCTGAGCTACCAAAGGTTAATG TTCCTGAATTTCCAAAACCAGAATTGCCTAAGGTCCCTGAATTGCCAAAGCCTGAACTACCTAAGGTTCCTGAATTGCCA AAGCCTGAGCCACCTAAGGTTAATGTCCCTGAATTGCCAAAGCCTGAACTACCTAAGGTTCCTGAGCTGCCAAATCCCGA GCCACCCAAGGTTAATGTACCTGAACTGCAAAAGCCTGAGCTACCTAAGGTTAAGGTCCCTGAATTGGCAAGACCTGAGC TACCTAAGCTCAATGCCCCTGAATTGCCCAAACCAGAAATGCCTAAGGTCCCTGAGTTGCCAAAGCCTGAACTACCAAAG ATCAATGTCCCTGAATTGCCAAAACCAGAAATGCCTAAGGTCCCTGAATTTCCAAAGCCTGAGCTACCTAAGGTCCCTGA ATTTCCAAAGCCTGAGCTACCTAAGGTTAATGTTCCTGAATTGCCAAAACCTGAGATGCCTAAGGTCCCTGAGTTTCCAA AGCCTGAACTGCCTAAGGTTGATGTCCCTGAATTGCCTAAAGTCCCTGAAATTCCTAAATCCTTTCCAACCACCAGTCCT TAAGTTGGAATCATGTCTTTTTTCATGTCATATAGCTTCCTATTATCCAGTGCCTAGCTCATGCTGTTTGATTTCCAATT CTTTATAAAATTTTCATATGTTGTAGCTACATGAGAGTGGTTGTCATGGTTTAGTATGAACCTTATTAAATTACACATTA CGTTTAGTGTCAAGCTTGTTTAGTTGATTATACTACTGATATTGAGGGTCATATCATATCCTTCTTGTAAAGTGTCATGA ATTTAATAAGATTGTATTTTTTATTCAGAAATTTCCAAGATTTTTATATCTAATGTTGTTTGAGCAGCCGTGTTGCTAAC TTTTATCAAATCTAGAATACAACTCCAAATTCAGCTTTGGATCATACGATAGATAATTTAATTTCTAAGTTTATTAGTGT ATGTGAAAAACTTAAACATGGAGCAATCTTAATCGGTTAGTAGTAGTACTACACTACTAGCGGAACTGGAACCACGAGTG CCACAAGTCCACTAGCAAATTTTGAACCTGACTAACATTTACTCCACGAATATCTTGAGGTGGTTGAGTTATACACAAAA AATGGCAAACAAATGAAGAAATACAACATGGCAAATGAAGCTCTTAACACTTGATTATGATAATATACAGTGGCCAAGAG AAAAAGCTGAGCCATCAGCATGATCCTCGATGCATACTTGTATTATCTTTGTAAAGATAGTGAAAGTTAGTTGAGCTAGT TATAACTGCCGATAGTTAGAATTAGCACTTAGCAGTTAATTGAGTTAG
CDS sequence (LotjaGi2g1v0278000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGCAGTTTGTCAACAATCATCTTTCCACTTTTGGTTCTAACTTTGTTGTCAGCAAACAGCCACATAATGGT TGCCGGGGCACGCATTCTTTTAGAGTCAAAGCCTGTCTTGCCTGAAGTCCCTGAATTACCTAAGCCAGAATTGCCTAAGA TCCCAGAATTTCCAAAACCAGAACTGCCTAAACTTCCTGAACTGCCAAAGCCTGAGCTACCAAAGGTTAATGTTCCTGAA TTGCCAAAACCAGAATTGCCTAAGGTCCCTGAATTGCCAAAGCCTGAACTACCTAAGGTTCCTGAGTTGCCAAAGCCTGA ACTACCTAAGGTTCCTGAGTTGCCAAAGCCTGAGCTACCTAAGATTAATGTCCCTGAATTTCCAAAGCCTGAGCTACCTA AGGTCCCTGAATTTCCAAAGCCTGAGCTACCTAAGGTTAATGTTCCTGAATTGCCAAAACCTGAGATGCCTAAGGTCCCT GAGTTTCCAAAGCCTGAACTGCCTAAGGTTGATGTCCCTGAATTGCCTAAAGTCCCTGAAATTCCTAAATCCTTTCCAAC CACCAGTCCTTAA
Protein sequence (LotjaGi2g1v0278000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSLSTIIFPLLVLTLLSANSHIMVAGARILLESKPVLPEVPELPKPELPKIPEFPKPELPKLPELPKPELPKVNVPE LPKPELPKVPELPKPELPKVPELPKPELPKVPELPKPELPKINVPEFPKPELPKVPEFPKPELPKVNVPELPKPEMPKVP EFPKPELPKVDVPELPKVPEIPKSFPTTSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 122 | 122 | 7.4E-52 | – | |
| PANTHER | 1 | 122 | 122 | 7.4E-52 | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 190 | 167 | - | – | |
| PRINTS | 38 | 50 | 13 | 1.1E-9 | – | |
| MobiDBLite | 44 | 190 | 147 | - | – | |
| PRINTS | 51 | 72 | 22 | 1.1E-9 | – | |
| MobiDBLite | 69 | 86 | 18 | - | – | |
| PRINTS | 80 | 96 | 17 | 1.1E-9 | – | |
| PRINTS | 105 | 122 | 18 | 1.1E-9 | – | |
| PANTHER | 111 | 183 | 73 | 7.4E-52 | – | |
| PANTHER | 111 | 183 | 73 | 7.4E-52 | – | |
| MobiDBLite | 115 | 132 | 18 | - | – | |
| MobiDBLite | 139 | 156 | 18 | - | – | |
| PRINTS | 145 | 170 | 26 | 1.1E-9 | – | |
| MobiDBLite | 157 | 173 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0278000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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