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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR35099
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.015s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064719.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782128|gb|EOY29384.1| chr0 22412993 22414399 -
1 domain prediction
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Lj0g3v0064719.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782128|gb|EOY29384.1| chr0 22412993 22416377 -
1 domain prediction
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Lj0g3v0343459.1
n.a. DNA-directed RNA polymerase [Medicago truncatula] gi|357468037|ref|XP_003604303.1| chr0 180051124 180055761 -
1 domain prediction
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Lj0g3v0343459.2
n.a. DNA-directed RNA polymerase [Medicago truncatula] gi|357468037|ref|XP_003604303.1| chr0 180051124 180055761 -
1 domain prediction
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Lj3g3v0017520.1
n.a. DNA-directed RNA polymerase [Medicago truncatula] gi|357468037|ref|XP_003604303.1| chr3 358270 362886 +
1 domain prediction
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Lj3g3v0017520.2
n.a. DNA-directed RNA polymerase [Medicago truncatula] gi|357468037|ref|XP_003604303.1| chr3 358270 362886 +
1 domain prediction
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LotjaGi1g1v0380000.1
n.a. Pyridoxine/pyridoxal/pyridoxamine kinase; TAIR: AT4G32030.1 hypothetical protein; Swiss-Prot: sp|P29149|POL1_GFLV RNA1 polyprotein; TrEMBL-Plants: tr|A0A0S3RC80|A0A0S3RC80_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0380000 LjG1.1_chr1 86142481 86146289 +
1 domain prediction
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LotjaGi3g1v0005400.1
n.a. G protein-regulated inducer of neurite outgrowth 1; TAIR: AT1G15800.1 hypothetical protein; Swiss-Prot: sp|A8FDH3|MUTS_BACP2 DNA mismatch repair protein MutS; TrEMBL-Plants: tr|V7BXQ8|V7BXQ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0005400 LjG1.1_chr3 691255 697361 +
1 domain prediction
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LotjaGi3g1v0352600_LC.1
n.a. Methionyl-tRNA formyltransferase; TAIR: AT1G80610.1 hypothetical protein; Swiss-Prot: sp|P44787|FMT_HAEIN Methionyl-tRNA formyltransferase; TrEMBL-Plants: tr|U5FI34|U5FI34_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73221258 73226683 +
1 domain prediction
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LotjaGi3g1v0352600_LC.2
n.a. Methionyl-tRNA formyltransferase; TAIR: AT1G80610.1 hypothetical protein; Swiss-Prot: sp|P44787|FMT_HAEIN Methionyl-tRNA formyltransferase; TrEMBL-Plants: tr|U5FI34|U5FI34_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73221258 73226683 +
1 domain prediction
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LotjaGi3g1v0352600_LC.3
n.a. Methionyl-tRNA formyltransferase; TAIR: AT1G80610.1 hypothetical protein; Swiss-Prot: sp|P44787|FMT_HAEIN Methionyl-tRNA formyltransferase; TrEMBL-Plants: tr|U5FI34|U5FI34_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73221258 73226683 +
1 domain prediction
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LotjaGi3g1v0352600_LC.4
n.a. Homeobox protein NANOG; TAIR: AT1G80610.1 hypothetical protein; Swiss-Prot: sp|Q59437|BGLA_ENTAG Beta-glucosidase A; TrEMBL-Plants: tr|U5FI34|U5FI34_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73221258 73226683 +
1 domain prediction
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LotjaGi3g1v0352600_LC.5
n.a. Beta-glucosidase A; TAIR: AT4G32030.1 hypothetical protein; Swiss-Prot: sp|Q59437|BGLA_ENTAG Beta-glucosidase A; TrEMBL-Plants: tr|A0A1J7GTY0|A0A1J7GTY0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73223720 73226261 +
1 domain prediction
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LotjaGi3g1v0352600_LC.6
n.a. Alpha-internexin; TAIR: AT1G80610.1 hypothetical protein; Swiss-Prot: sp|E5R2Q7|DPEP1_ARTGP Putative dipeptidase MGYG_00085; TrEMBL-Plants: tr|A0A1J7GTY0|A0A1J7GTY0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352600_LC LjG1.1_chr3 73223720 73226261 +
1 domain prediction
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