Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0380000 |
| Transcript ID | LotjaGi1g1v0380000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pyridoxine/pyridoxal/pyridoxamine kinase; TAIR: AT4G32030.1 hypothetical protein; Swiss-Prot: sp|P29149|POL1_GFLV RNA1 polyprotein; TrEMBL-Plants: tr|A0A0S3RC80|A0A0S3RC80_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0380000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86142481..86146289) extracted from Lotus japonicus Gifu genome v1.2.
AACATTGAAAAACAAAAATTGAATATAATTTGAGGATTAGAACCAAAAATAAGGAAAGTGAATAATAAATATTAATTCGT AATGAAGGTGGCGCATGTCAGCAAAAGTGGTTCCGAAAGAGAAGAGAGTAAGAAAGAGCATAAAAGAGTGAAGACCCCAC CATGACCACACCCACCCCTACCTTCTTCGATCATCTCTCAACCCTTCCTTCCTCTGCTCCATTTTTATTCCTCTTCACCG CCACAAAATTTCACTACCTCTTAATTATTTATATATTATCAATCACAATTCACACATATATATAAACCTCTCATTCCCTT TCTCTTTGTCATTTTCAGTTTTCACCCTCCGCCACTCTCTCTTCTCTCTCTCTCTTACATGACTATCATCTTCCACCGAT GACTGTCAACGATTACTGGGTGCGAGTTGCCATGGCGGACGACGCCGTCGTCGCCGAGCTTCTGATTCGCCTCAAACAGC AACGTGCTTCAACCAAATCTCCGGTTATGGCCGCTCTGCCGTTCTCCTGGGGGCAAAAACAGCCACGCTCAAGATCGAGA CTAACCGCTTCCGTCTCTCGCTGCGACGCTGCCGGCGCCGTTTCCACCAGATGCAGTCCAACCACTCCTCTCTCATGGAG CGGCGGCGCTTCTCCCTCCGCCACCGCCGATGGTTACGAAGACTCCAGCCGCCACCACCACGCCTCCAGATCCAAGGTAC TCTCTCTCTATACATCTATCTATCTACATGAATTTGTCAACCTCCGCCGTCGGAGCTTTGTGGCTCTCGGCGGTTGAAAC GGCGGCATCATGAGATTCTTACCTTCGTAAAGACGTTTTCTTACAGTTTTGACAATTTTGCCCTTGATCTCTTTTCTCAC AGTCACAGGCCTTAAGGCCAGTAGCGTTTTTCGTTTCCCAATCGCAAATCGTTTTCAGTTTTGCGCTGACACCAGACGAT GACGGGGCAAATCTGTCAATTTCTCCATTTTTTTGTTTGTTTTTTCAACATAGAAACTGACTCTTCTTCCTTCCATCAAC TGCTTCTGGATTATCGAGTTTGATGATGCGTTTGCGGTTTACATGTGTTTGTTTCTTCGAATCTGAACTCGTTTTTTCAT CATGGTGACGACGGAAACTGCCCTGAGAAATTTGTGGCGTTGATGTCAGCAATGAAAAACGAGTTTGGCGTTTTGTTTCT GCTCGCACCGGTTCGTTGAGTCATTGACGAAAATACCCTCCATGGGTACAATTATCTAAAGAAGATTCCACGACACGCTT TTCTTCTGCTGACTGACAAAAGTTGAAAATCTGTATTCCTACTACTACGAGAAAAGAATCAGCAACCCTTTTTACTTTTA TTTTCTATTATAAGTAAAATATAAAAATCGCACTGGGAGCGTGAGGGGTATTTGTGTCAATTTACATCATGGGTGGTGGG TCCTTACGCCCTTATGGTTTGCGTCGTGACGGTTGTGCGGTTCGTTGAAGTTAGTGTCCCGAGTTAGTGGCTGGTTCTAT ACAAATAGACTTGGATTGTTGGATTCATCGCAGTCGGTAATCCTGTATTCGTCGCAGTTAGGGTTCTTTGTCATCCTATG ATCCTAAATTATGATAGGATTTCAGAGAATTCTAACTCCAACGAATACGAATAGACCGTATGCATTTGTTGCTATAGTAC CCACCCCTTTTTTTTCAAAGCATTAAATAGTTGTAACCAATGGTTTGAATACATTTTGCATTGATGGGGAGAGGGATTTC TCGTGTTAGAGATGTGATAGGCGCATAGCACACACAGACACGCATAATTCAGAAGCAGCTACACCACAGAAGGAACCATT ATGATGAGGTAGATAGGGAATCACGAGGGTGACAGTGAAAGCGTTTAACGGTAGCTAAAGTTGGTGGCATAAATAGGAAA ATGAAATCCCTTAGCTTATGGATTTGGTTGGGTATGGAGTGGTGTTGAAAACAGGCACCGCCCAGCTTCTGCGGCACGAG GCCCACTTTCACTCGAGTGTGTGTGCACCCTAGCTCACGTGATCCATGTCACGTGAGGAGCAGATTCTCACGTGCTATCA CGTGAGTAGTATGTTATGCTATAATGCTAGCTGTCCTGTGCTGATTTGTTTCTGTGTGTATGAATTAACAATATTCAATG GGCCTGATGGTGGGTGAGGGATGGGTATGGCCTTCGTTGTCATTCTCACTCATCTCAGACGTGTCCCATTCTTAATGCAT AAATCAGGTGCGGTGGGACCAACAATTTACCTACTGCCTATAAATTTTAGATGTTATAATATAAGATGCATTGCATTCCT CAAGTTGTGATGGCTGATTTGATTTGTGTCTATTGATATTGTCACTGTTTTGCTAATGCTTGATGATCGAAACAAAATTT CAGGCTACTGCTACAAGTGGATACACCGGCAACTCTGCCTCTGCCAAGAAGTGTAGAAAGAAGAAGGTAAAGCTATTCAT TTCATCTTGGTCAATTATGATTTATGGGTTGAGTTCTGCCATTTTCAATGGCCTCTGATTGGCTGCTGATATGTTACATA TGAATGTTGATCATGAATATTATTTTATTTGTCATCTCCAGACATTTGCACAATTACAGGAAGAGGAGACCTCCCTGCTG AAGGAAAGGGTATGTTTAAAAAAGGTATCTTTCTGATCTTGTGCATATTTTTTTAATAATCAAGAATCATGATTAAGATG CCATGTTTGATTAATTGATTTAATAATAATGTCACTATTGTCTTACAGGAGATAGCAACTACAAAAGCAAGTTTTGAAGC AGAGAGGGTTAAAAATCAGAGTTTGAAGAGGATGAAGGTCTATACACTTTTCTCAAACTGTATAGAATAATTTTCTGAAA TGCCCATTTTGTTTCTGACCTCAATTCATTTTGTATGTTCTCAGCTTGATGTAGGATCAAAATCTCATGCCAAACCTAGT CCAGCATCTGCTGCACTGAAGAGTACACTTGCTGGTCAACCCCACCAGAGAATAGCCCCTGTGACACGTGTCACCCAGGA TGACACTCATTCACAAGCATCAGAAACCAGGCCAAACGGGATGGAGTCAACAGGGGATAGCTTTTTCTTGATACCTGATC TAAACATGATGCCCTCTGATGATGCTTCCTTCACTGTGGTATGAATTAGTTCAGAGACTTGAGACCTACCTGCTTGTTAT CATCCTCCAGAATGGAGGAGGACTCTTGGAACGGTTGGGGAAAAACAACTCTGAACAATGTACAGGGCCAGAGAGAGCAT TTTGAAGGCTCTAATCCAATGGAAAACGTCCTGCAGGAGAAACATCTCTTCATGCTACTACCAATTCTCAGTGAAAGGAT AAGAACTGGTGGTTGATGGTAATGGAAATTGTTTCTCAAGTTAGTTCTAGCCTTTAGGCTTAGAGTAGAGAGATATATCA ACGTGATTCCTCATTCTGAAATTGCTTTAGTTTTAAGGGGCTAAAATAAAGCCTCTGAATTTCTGATTTGGGGATTCTTC AATCATGTAAGATGTAGAACCATTCTTTTGTGGCTTAAAGCTCTTTTGGATTCCTTTACATGATGGTGTTTTACGTTAAT CTAGTAAAAATTTATTGGCGCACCTTCATTTCTTTAATATCTAGGGATTTCCTATGTTGTGTCTGTGAGTCACCTCTTTG AGGATGTTTAGGGTTAATGGTCGAATTGGTCCCTGTGTTTGTAGTAAATTTTGATTTTAGTCCTTCCCCGGAAAAAACTT GTCGATATCTCCCTGCAGTTGCAAGAATTTTGGTATTAGTCCTCGCCGG
CDS sequence (LotjaGi1g1v0380000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGTCAACGATTACTGGGTGCGAGTTGCCATGGCGGACGACGCCGTCGTCGCCGAGCTTCTGATTCGCCTCAAACA GCAACGTGCTTCAACCAAATCTCCGGTTATGGCCGCTCTGCCGTTCTCCTGGGGGCAAAAACAGCCACGCTCAAGATCGA GACTAACCGCTTCCGTCTCTCGCTGCGACGCTGCCGGCGCCGTTTCCACCAGATGCAGTCCAACCACTCCTCTCTCATGG AGCGGCGGCGCTTCTCCCTCCGCCACCGCCGATGGTTACGAAGACTCCAGCCGCCACCACCACGCCTCCAGATCCAAGGC TACTGCTACAAGTGGATACACCGGCAACTCTGCCTCTGCCAAGAAGTGTAGAAAGAAGAAGACATTTGCACAATTACAGG AAGAGGAGACCTCCCTGCTGAAGGAAAGGGTATGTTTAAAAAAGGAGATAGCAACTACAAAAGCAAGTTTTGAAGCAGAG AGGGTTAAAAATCAGAGTTTGAAGAGGATGAAGCTTGATGTAGGATCAAAATCTCATGCCAAACCTAGTCCAGCATCTGC TGCACTGAAGAGTACACTTGCTGGTCAACCCCACCAGAGAATAGCCCCTGTGACACGTGTCACCCAGGATGACACTCATT CACAAGCATCAGAAACCAGGCCAAACGGGATGGAGTCAACAGGGGATAGCTTTTTCTTGATACCTGATCTAAACATGATG CCCTCTGATGATGCTTCCTTCACTGTGGTATGA
Protein sequence (LotjaGi1g1v0380000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVNDYWVRVAMADDAVVAELLIRLKQQRASTKSPVMAALPFSWGQKQPRSRSRLTASVSRCDAAGAVSTRCSPTTPLSW SGGASPSATADGYEDSSRHHHASRSKATATSGYTGNSASAKKCRKKKTFAQLQEEETSLLKERVCLKKEIATTKASFEAE RVKNQSLKRMKLDVGSKSHAKPSPASAALKSTLAGQPHQRIAPVTRVTQDDTHSQASETRPNGMESTGDSFFLIPDLNMM PSDDASFTVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 246 | 246 | 3.4E-84 | – | |
| PANTHER | 1 | 246 | 246 | 3.4E-84 | – | |
| MobiDBLite | 73 | 124 | 52 | - | – | |
| MobiDBLite | 73 | 92 | 20 | - | – | |
| CDD | 116 | 151 | 36 | 0.00187672 | – | |
| Coils | 129 | 149 | 21 | - | – | |
| MobiDBLite | 172 | 230 | 59 | - | – | |
| MobiDBLite | 202 | 226 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0380000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…