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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR46463
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.013s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0518600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G15790.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3SB07|I3SB07_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0518600 LjG1.1_chr1 104212260 104216688 -
1 domain prediction
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LotjaGi1g1v0740000.1
n.a. E3 ubiquitin-protein ligase family; TAIR: AT5G22000.1 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|I3SYU5|I3SYU5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0740000 LjG1.1_chr1 131394492 131399703 -
1 domain prediction
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LotjaGi1g1v0740000.2
n.a. E3 ubiquitin-protein ligase family; TAIR: AT5G22000.2 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|I3SYU5|I3SYU5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0740000 LjG1.1_chr1 131394768 131399743 -
1 domain prediction
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LotjaGi1g1v0740000.3
n.a. E3 ubiquitin-protein ligase family; TAIR: AT5G22000.1 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|I3SYU5|I3SYU5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0740000 LjG1.1_chr1 131394805 131399127 -
1 domain prediction
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LotjaGi2g1v0270600.1
n.a. RING/U-box superfamily protein; TAIR: AT5G15790.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3STN7|I3STN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270600 LjG1.1_chr2 74132741 74157383 -
1 domain prediction
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LotjaGi2g1v0270600.2
n.a. RING/U-box superfamily protein; TAIR: AT5G15790.4 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3STN7|I3STN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270600 LjG1.1_chr2 74153416 74156078 -
1 domain prediction
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LotjaGi2g1v0434700.1
n.a. RING/U-box superfamily protein, putative; TAIR: AT5G41350.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q2HIJ8|RHB1A_ARATH Probable E3 ubiquitin-protein ligase RHB1A; TrEMBL-Plants: tr|V7CPE3|V7CPE3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0434700 LjG1.1_chr2 93102909 93106431 -
1 domain prediction
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LotjaGi3g1v0185100.1
n.a. E3 ubiquitin-protein ligase family; TAIR: AT5G22000.1 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|A0A0B2RPT0|A0A0B2RPT0_GLYSO E3 ubiquitin-protein ligase RHF2A; Found in the gene: LotjaGi3g1v0185100 LjG1.1_chr3 25925437 25930330 -
1 domain prediction
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LotjaGi3g1v0185100.2
n.a. E3 ubiquitin-protein ligase family; TAIR: AT5G22000.1 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|A0A0B2RPT0|A0A0B2RPT0_GLYSO E3 ubiquitin-protein ligase RHF2A; Found in the gene: LotjaGi3g1v0185100 LjG1.1_chr3 25926293 25930147 -
1 domain prediction
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LotjaGi3g1v0385100.1
n.a. RING/U-box superfamily protein, putative; TAIR: AT4G00335.1 RING-H2 finger B1A; Swiss-Prot: sp|Q2HIJ8|RHB1A_ARATH Probable E3 ubiquitin-protein ligase RHB1A; TrEMBL-Plants: tr|I1MKV0|I1MKV0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0385100 LjG1.1_chr3 78015838 78021894 -
1 domain prediction
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LotjaGi6g1v0296600.1
n.a. E3 ubiquitin-protein ligase family; TAIR: AT4G14220.1 RING-H2 group F1A; Swiss-Prot: sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A; TrEMBL-Plants: tr|I3STT9|I3STT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0296600 LjG1.1_chr6 61435709 61438798 +
1 domain prediction
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