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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0740000 |
| Transcript ID | LotjaGi1g1v0740000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase family; TAIR: AT5G22000.1 RING-H2 group F2A; Swiss-Prot: sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A; TrEMBL-Plants: tr|I3SYU5|I3SYU5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0740000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131394492..131399703) extracted from Lotus japonicus Gifu genome v1.2.
TACAGTTTTAAAGATAAAAAAAATATAGGAAAAAAAAACAGAATCCAATACCCAAGCCATATTTAAAGTTGTGTGTTTTA ATTTTATTTTAATCATGTTTTAATTTCTTCCCCTGATGGTGCGGGGGAAGAGGAGGGTTTGTCAAGGTAAAGTTGCATTC ATTCATTCATTCATTCCCTTTCTTTTTTATCATCATCGTTTCTCTCACTCAATTCCCTTTCTCTGCAACAATGGATCTCT AGCATTTGATCCTTGTTCTCCTCTTGATGTTTTTGCCCTCTGTTTCCTGACCCTTAATTGATCAAATTTTTTCTCAATGG AGGTGTGTTTTGTTCAAATTTGATCCATTTTTGCACCTTGTTCTGTCTCACAACAATCTCATATTGCAGCAAAGATTTAT TTTTTATTATTAAAACAGTTTCATTTTGTTCTTTGCATTATTATGGTTGATATGGGCATTTTTGTTTGTCTGTTTTTTTA TTCTTATTTTCAGCATCAACAGCTTTCAACTCTCTGGCCAATTTTCTATTATTAGTTTTAATAATTTTAACCTTTGGAGG TGGTGGTTGGAATAATTGAGAGGGAGATATGATGCACTTAGCTCAAACTAGTTGGAATTTGGTGAAGTTGAATTCACCTA TTAATGTCTTGTATTATTTCCCTGTCTTCTTCCTGGTTCACTAGATGATTCCTGTAGAATCTGGATTTTAATTTTATTTA TTGAGATGAATTTTGGGTAATGGCTGGTTTGGATTAGCATCTAGCTTATGTGAGCTTTTCAATTCAGGTATGTATTTGGT TCTTAGCTCAGGAGAAAGCCCTCCGCGCGCGTTTATAGGTGTTTAGACTTTAGATAAGTTAGATGAGGAAAGTCTTGAAA AAGTAGAGATCAAGAAGTTGATTGAGAAGTTATTATTTAGAATACTTATTATTATTGCAGGATTATATCCATGTTTTAGT GTTGGTTGAATGAATTTCCTTTTCTTCTTTGTTCACAAAATTGTGCATTCAAGAGCACCACTTGCACAAGCAAAATCATT GCGACTGACTCTGAGGTTGTGGCTTGATATGTAAAAGGTTCCGGTGATGGAAAGCAAAACTGAAGGTCACATGACATCAG CTGCGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTGTGAAAGT GATCCTTCAACGGTACTTGTCACAAAATTATTCTTTCACTGATATAATTGTAAAGTACAGTTCATTTCAAGAGCATTTGC TTACTAGTTGTCTTTATCTTACTTTTCAGGTCACTGTTTGCAGGCATGAGTTTCACCTGCAGTGCATTCTTGAATGGTAC ATCTTCATATCCCTGTATTTTCATGTGTATCTCTCAGCATTCAGATTTTTTAGGGCAGATTTTGCTCAATATCCATTTAG TTTGTGCCAACGAAAACAAATGATTAAAATAGTTTGAGGCTTTCAACACTGTCAAGTACCCACATTACCATCATTAGAAT CAGAAGTCTGAATATATTGGCATAGTTGTATGATATTTCTTTCTTGTTTCAATTTTTTTTATATTTTGAGTGAGGGTTGA GGGTGAGTGATTTCGAAATTTTCACAAGGGATATAGCCAACCAGCATTGATGTCATTCCCTGCTTAAAGGAAGCGAGCTC TAACTGCTTGACCCAAGTAGGGGATTCTTACTCTTGGTTTCTTTTTTTGACAATATGATAATTGTCAGAAGCCTTTTTAT ATAGAGAGAGGACTAAATTGCCTCTGACATAAGTTTGACTGCCATATTGTGTCGTGTGTCTTAATTTCACTTTTATTTTG TGATTGAATTTCCTCTTATGCATAAAATTCACGCCCACTGTTTTCTGTCATATTCATATCAAGTTTGGTGAAAATCATAT ACTACAAGTCTACAACTTTCACATCTACTTTTGCTAAAACTTCTGCGTCTCAGTCCTCCATAACAAGTAAAAGAATTTGG AAACAAAATCCTGCCGTTATGGATGCAAGATACGTGTGAATTTTGGTTCATGAGTAAAATGGTATCTCTGAAGCTTTATA ATGATGGATTTCTTGATTGAATATTCATAGAAATCATAATTTTAAAACTTCTTCAGTAGTATGAATTGGAATGTTGTTCC ATGTTTTTGGCTTTGCCTTACATTCATCAATGCAATCACTGCTGGCTATGGCTTGTGATCTAACAACTGGACTTTACTGC CGCCACTTTGGCTGGAAAATTAGTAAACTAGCCTGTGTGTGTGGGAAGAGAGTCCCGTATACGGTCCAAGATATTCTTGT CATTTCTAAATATATAAATACACATTAAAAGTTTTGGTCTCATAAACATATCTTGAAATGGAAGAATGCACTTTAGCAGT TGTTACTGGCTCTTGTTTGTAGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAAAACATTAGCTTGAAGGATCCT ACCAGGTAATGGTTCTTGCTTTGAAGGATCTACTTTATCTATGTTATCATTCTTTAGTTGATTACGATATAAACTAGTAC GCATGTTATGGCAGTCAGGAATTGTTTGAGGGAGTAGAGCACGAGAGGAGGTTGAGGGAGACTCCATCAAGAAATGCTGC TATTTTTCATCACCCTGCCCTTGGTGATTTTGACCTGCAGCACGTCAGTTATCAGTCTCTTGGATTATTTGTTTGCCTGA TATCTTAAGAACATCTTGATTCTACCATTTGTTTATGTTATCACTTTTTCTTATTCTACAGTTAAGCATGGGTGTTAATG ATGGTGATTTTGAAGAGCGACTAATTCAACATTTAGCCGCTGCAGCAGCAATGAGGAGACACCACCTTGTTCGTAGGGAA GGACAGAGAACTCGATCATCTGCTCAGGGTCATCCCCATTTCTTAGTATTCTCAACTCAGCCTATTGCATCTCCACTAGG TCCTGATTCAGCAGCTGGAGGGGGAAATGAACCAGCTGTAATTCCTGTAGGAAGTCCATCTACCCCAATAGCATTTGATG GAGATGAACCATCACAGCAGATCTCACATATTCGAACTCAACGCTCCTCTTCATCTTCTGGATCTGGCATGGCAACAAAT CGCCAAGGAATTTACTCTAGTGATAGGTAGTTATGGCTATATTATTTGTTTCCGAAATTAATATGTGCTTACTACAAATT CCTCCTCTCTATTACGAAAAGTCGAAAACGTACTAAAAATTACCTTGTATTTATGTAAAATGCAATAATTAAATCCAAAA TTCTGTCAAGCCTAAGGGACTCGATATCTGAATTCTGAACTGTTTATTCATGAACTCTGTTAATGAATTTGTTAGCTTTA ACAATATCCTGGAGTTAACTTTAATGTTATGGTAAATATGTGTAAATTTTCGATATAGGGGCAGGTATTCACGGCAAACA TAAAATACAGGATTGGAGAATAGTTTACTCTGCTAATTTTCTTAAGAATCATTATTGGTTCTATGCATTAGTGAAGTCAT ATGCTGTGCATTTTACTTGCTTGCAGAGGCTCTGCTGCTCCTTCTTCACCTGCAAGCCAAGATAGAGCAGGGCCGTCGGA GTTGCAGTCATTTTCGGATTCTCTGCGGTCCAAACTAAATTCGGTATCCATGAGGTATTTTTTTTAGGAAACTGTGGATT TTCGCACAATCTGTGTTTTGTTAAGTCAACTTATTTTGATATTTACCTGATTTTTTACCAAGATATAAGGAGTCAATTTC AAAGGGTGCCAGGGGATGGAAGGAAAGATTGTTCTCTCGAAGTTCTTCCATGTCTGAACCTGGTTCTGAAGCTAGGAGTG AGGTGAATGCTGAAATTGCTAGTGTATCCCAGTTGATGGAATCCCTTGAAACTAGAAAAAACACTAGAGTGCATTCGGAG GATGGTGGTTCAATGGCAGAGGTGAACAACCAGAGCAGCGTTGAAGCTAGAGGAGACAACTCTCCACACCACGACAATTC TCCAGCTGCTTGTTCTGCTAGCTCACATTCAAGTTGAGCAGTTTTTTGTTCCGGTTAATGCTTCTTTCCTCAGCATCTCA TATTTGAAGGTGAGCTTTGTTCTTTCTCTAAACCGTCACAACAGAATCAACTAGTCTTGCCTTCCATTTATAAACTAAGT GCATGTTTGGGAATTATTCAAGAGTTGATTCTGAAGTGAAGTCAATCAATTATTGGGAGAAGCTTCTGAGTGCCATAATT ATTTTTGAGGAAAGCGAAGCTGATCCAAACATGCTATAGATTATTGTTTTTATTCTTATGATAAATGTCATCAATTACTA GTTTACCTAAAAAGATGTCACCGATCACTATAATATGTAATGTTTTTGCGTCTCCATCAATTGGAATATTGGAATCACTT TGCATTTTACTTCACAGTGCAAAAAACAATTTTATCATGGCACGTAACATTGGGATTGTGTTGCATGTATCATAGTTCAT TTGTTCTAATTGTATTTGTATCCCTTTGGTGCGTGTCACTTATTTGGTCTCATTTGTGTTGTGTTTTCCCCTCCTCAGGC TAAGTGTTACTCCAGACATGACATGCTGAGGGGCAGAAGCTTTGGAAATAGTCATGGCTGTTTTACAAAATTACAATAAA AATCAGGATCTGAGAGACACCTGTGTATAAAGCTAAAAACTATTGTTTCTATGCGTGTGTATGTATATATTATGCTCGGA ACGCTGAAGAGTTGTATGTATTTAAAATGTCTGGGTGAATGGCTTTTTGAATTTGAACTTGCACCATGTAATCTGGTCAT AATTGTATCCCCATGTGAGAATATTTTTTGAAATTCAATGAACTTATCCCCGGGATTTATCATCATAATAGATTATTTGA GCTTATCTTATTCTATAAATGCTTATGCAAGTGTCGGAGAGAATTCATGTAAATAGGTTATGACCTACCTATAACTGTTT TGAGCTTATTTTAAGTAAGCTTTTTAAAACTGCTTATAAAGAAATGCTTACATTGTAATAAAGTACTTAATTAAGCTTTT AATAGCACCTTAATATTATTCCTCCTTTGAAATGTAAGGGAAAAGGGGACCAATGTGAAGATGATCTAATTAGCATGGTT AAAATAAAATCGTTGAATAATTTATTTCCCTTCTTATTGTCCTTTTAAATGGCTCTCTATACACGAGCAGTTCATGTATA TTGTGTGAAGTT
CDS sequence (LotjaGi1g1v0740000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCAAAACTGAAGGTCACATGACATCAGCTGCGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGC TTGCAGCATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACTGTTTGCAGGCATGAGTTTCACCTGCAGT GCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAAAACATTAGCTTGAAGGATCCTACCAGTCAG GAATTGTTTGAGGGAGTAGAGCACGAGAGGAGGTTGAGGGAGACTCCATCAAGAAATGCTGCTATTTTTCATCACCCTGC CCTTGGTGATTTTGACCTGCAGCACTTAAGCATGGGTGTTAATGATGGTGATTTTGAAGAGCGACTAATTCAACATTTAG CCGCTGCAGCAGCAATGAGGAGACACCACCTTGTTCGTAGGGAAGGACAGAGAACTCGATCATCTGCTCAGGGTCATCCC CATTTCTTAGTATTCTCAACTCAGCCTATTGCATCTCCACTAGGTCCTGATTCAGCAGCTGGAGGGGGAAATGAACCAGC TGTAATTCCTGTAGGAAGTCCATCTACCCCAATAGCATTTGATGGAGATGAACCATCACAGCAGATCTCACATATTCGAA CTCAACGCTCCTCTTCATCTTCTGGATCTGGCATGGCAACAAATCGCCAAGGAATTTACTCTAGTGATAGAGGCTCTGCT GCTCCTTCTTCACCTGCAAGCCAAGATAGAGCAGGGCCGTCGGAGTTGCAGTCATTTTCGGATTCTCTGCGGTCCAAACT AAATTCGGTATCCATGAGATATAAGGAGTCAATTTCAAAGGGTGCCAGGGGATGGAAGGAAAGATTGTTCTCTCGAAGTT CTTCCATGTCTGAACCTGGTTCTGAAGCTAGGAGTGAGGTGAATGCTGAAATTGCTAGTGTATCCCAGTTGATGGAATCC CTTGAAACTAGAAAAAACACTAGAGTGCATTCGGAGGATGGTGGTTCAATGGCAGAGGTGAACAACCAGAGCAGCGTTGA AGCTAGAGGAGACAACTCTCCACACCACGACAATTCTCCAGCTGCTTGTTCTGCTAGCTCACATTCAAGTTGA
Protein sequence (LotjaGi1g1v0740000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKTEGHMTSAAAFVEGGIQESCDDACSICLEEFCESDPSTVTVCRHEFHLQCILEWCQRSSQCPMCWQNISLKDPTSQ ELFEGVEHERRLRETPSRNAAIFHHPALGDFDLQHLSMGVNDGDFEERLIQHLAAAAAMRRHHLVRREGQRTRSSAQGHP HFLVFSTQPIASPLGPDSAAGGGNEPAVIPVGSPSTPIAFDGDEPSQQISHIRTQRSSSSSGSGMATNRQGIYSSDRGSA APSSPASQDRAGPSELQSFSDSLRSKLNSVSMRYKESISKGARGWKERLFSRSSSMSEPGSEARSEVNAEIASVSQLMES LETRKNTRVHSEDGGSMAEVNNQSSVEARGDNSPHHDNSPAACSASSHSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 369 | 367 | 7.0E-166 | – | |
| PANTHER | 3 | 369 | 367 | 7.0E-166 | – | |
| Gene3D | 11 | 74 | 64 | 7.2E-14 | ||
| SUPERFAMILY | 21 | 76 | 56 | 1.79E-16 | – | |
| Pfam | 27 | 68 | 42 | 4.3E-9 | ||
| SMART | 28 | 68 | 41 | 2.1E-5 | ||
| ProSiteProfiles | 28 | 68 | 41 | 12.047 | ||
| MobiDBLite | 168 | 260 | 93 | - | – | |
| MobiDBLite | 200 | 260 | 61 | - | – | |
| Coils | 304 | 324 | 21 | - | – | |
| MobiDBLite | 319 | 370 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0740000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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