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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0270600 |
| Transcript ID | LotjaGi2g1v0270600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G15790.4 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290; TrEMBL-Plants: tr|I3STN7|I3STN7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0270600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74153416..74156078) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTCTGTTTGTTGTTGTCTGAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTGTATAGGAACTG TGCTTGTCTCAGCTGCTTGATACAGAATGTTTTGAATGTGGTATGTCTTCACAATTCACATTCTATTTCCCTGCCTCTTT CGCGTTTTGTTTCCTTTCCTCTTAGTTGTTCATGGAAGGGTGATGCTCTGTGTTATGTTTTGCTGTACATAATTTGAATT TGATAGCTTCCCCTGTGACTTAGTGCATCGTTTTCCCATGAAGTCCATGCTTGTGGGATGGAAAATCTGTAGCATTTTCA GGTGCAATGCAACTGATTTTTTTGTTAGCATTGGTGTAAACATGCGTCTCTCCATTGTTCCTTTGGTAGGGATATCTAAC TTGGAAAAAATATACGTATCGGTTTTTTCGCATTAGCCTCTCTTTATTTTTCCCTAGAACGCTAGTCTTGAAATGTGTCA TAGTCCTTAAAGTTCACAAAATGTGATGTCCAACATTTATGCACTTGTTAAGGAATCTTATGAGTGCTATTAATGCTAGA AATGACTCTTAAAAGTTAAGTTACACGCTGAGGGGTTAAGTTTACATATGAAGCTCAAATGATTGCTTGTTTCTCCTTAC AAGGCCTCTAATAAATTAAACTAAGGGCAATTTAGAATGACCTATTGTTTGATTTAGTAAATATTCAGCATCTTTGCATC TAACTGTCGAAAGTCCATGGTGTAAATCCACTGTATTGATTACCATTGATATCAGTGAACTGCAACTGGAAGAATATTTT AGTCGTAAATCTGTATTTCAGGATAATGCATCTTGACATTGATGAGGGCTATATTTTGTAATAAAAACATAACCATTTTC CTATTTTTCTCAAATTTCAGTATACATCAATATTCCGTAGAGGGGAAGTGCATTCACTACCTTCATCTATTCAGGGAACA GCATCTATGACTTCTGCTGCATCGCTTGATAATTCTCTCTCTGACCTGTACCGATCTCCTCCAAGGCCCTTACCTTATGA TGCAGAACCTAGATATTTCCGCTCACAACGTGATGGTCTAGTTTCAAGGCGTGATAAGAGTTCAAGTCATTCAAATGAGG AAACAGAACCTCTGAGAAGTGATGTAGAGGTGGATCCAGAATCTTTTAATTCAGGAGACAAATGGAATGGATGTGCCGGT GATGATGGATCAAAGGAATGCCGTTCAAAGTCCGCACTAAAAATTTCATCAGCAAAATATACAACTGGAGTTGGGCTTAT TTATGCATCATCAGAAGAGGAAGATGTCTGTCCAACTTGTCTTGAAGGTAGCTTAAGAACGTCAAATTTTCATTAAGAGA ACCCTTAATACTTATTTGGACTTAAAATTTGATGAAGTGTTGATCTGGTTCACAAGATGCTTGATGACACATCTTAACAT CAACAACACCTTTCCTCCCTAGATGGAGTCGATTACATGGATCAAATACGCTATAATCTCTAATCAGTAAATTTATAGCC AGGAAGGGCCTATTTAAATCTAACTCCTTAATGGTTTGATATATAGTTTCTCTTGGTCTTTTTCTTTGCCTTCATCTAAC TATCGGACTACCCTTCATTTGACCTAATTTTCTTAGTAGTGGTTCTCAAAGTCTTCTCCATACATATCTAAAACACCTAA GGCAAGACTACCACCATTTCAATGATAGTTTTTACCTCACCTTTTCTCCAGTGCATTCATTCCTAATCTCATTTTTTTTC TTTATGTCTCACATTCTTGTGTGTGGCTTTTAACCGCTTAGCATCCAGTTCCATACAATATCATTGGTCTTATAGTTGTG CACCTGTGTAGTAACATTTTTCTTTGAGCTGAGTGGTATTTTTAAAATTAATACCCAAAGTACACCTCCAATTTATTCAT CCTGCTTATGGGTTACATCTCTCTATTTCCTTTTCATTTGGTATAGTGGACTCTAGATGCTTAAACCAAGTCTCGAATTT GACACATACCAAGAGAGTTGGATGTTTTATGATATATTTACTTATTACATGATGGATGATGCTATTGATCTTGTGAGTCT ATATTATGTATCAAATATCCTTTTACTTAACCACTTTTTCCCCTCGTGCCTTATCAGTCAAATGGGGATGATAAAATATG CTTCGCTTGGTTGTTTCATTAGTTGTACCTGAAGGTAGAAACCAATAATACACCAATGTTGAAGCAGCTTTGTCTTAGAA GTTAGAATGTAACTTTTGTAACAGGAACTTAGGAGGCCAATATTTAGTTCTGAGCTGTAATCTTTGTGAAACTCTGATCA TTGCTGCAATTAAGTGGTTATTTGTACTGCGAAACACATTATTAAGAGAATCAGATCTGGTAGATTCTTATGTTTCTACA ATTATTTTTGCTTGCAGAATACACTACTGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTCCACCTTGGTTGCA TTTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGAAAGGTAATAATAATACTACTTATTTTCTAATTTCTT TCTCAGTGAAATGATTTTAAGTTCTGTGGCCTTAACATAGAAATAGAATGCGTAAAATTCATTGTCTTAAGAGGTGAAAA CAGGACTAGACTGGTTTGGTTAG
CDS sequence (LotjaGi2g1v0270600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCTGTTTGTTGTTGTCTGAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTGTATAGGAACTG TGCTTGTCTCAGCTGCTTGATACAGAATGTTTTGAATGTGTATACATCAATATTCCGTAGAGGGGAAGTGCATTCACTAC CTTCATCTATTCAGGGAACAGCATCTATGACTTCTGCTGCATCGCTTGATAATTCTCTCTCTGACCTGTACCGATCTCCT CCAAGGCCCTTACCTTATGATGCAGAACCTAGATATTTCCGCTCACAACGTGATGGTCTAGTTTCAAGGCGTGATAAGAG TTCAAGTCATTCAAATGAGGAAACAGAACCTCTGAGAAGTGATGTAGAGGTGGATCCAGAATCTTTTAATTCAGGAGACA AATGGAATGGATGTGCCGGTGATGATGGATCAAAGGAATGCCGTTCAAAGTCCGCACTAAAAATTTCATCAGCAAAATAT ACAACTGGAGTTGGGCTTATTTATGCATCATCAGAAGAGGAAGATGTCTGTCCAACTTGTCTTGAAGAATACACTACTGA GAATCCAAAGATAATGACAAAATGCTCTCATCATTTCCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGATAACT GTCCAGTTTGTGGAAAGGTGAAAACAGGACTAGACTGGTTTGGTTAG
Protein sequence (LotjaGi2g1v0270600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVCCCLSFDDFEDYVNPNSPVYRNCACLSCLIQNVLNVYTSIFRRGEVHSLPSSIQGTASMTSAASLDNSLSDLYRSP PRPLPYDAEPRYFRSQRDGLVSRRDKSSSHSNEETEPLRSDVEVDPESFNSGDKWNGCAGDDGSKECRSKSALKISSAKY TTGVGLIYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVKTGLDWFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 221 | 221 | 2.8E-144 | – | |
| PANTHER | 1 | 221 | 221 | 2.8E-144 | – | |
| MobiDBLite | 98 | 144 | 47 | - | – | |
| MobiDBLite | 98 | 128 | 31 | - | – | |
| Gene3D | 154 | 222 | 69 | 6.0E-16 | ||
| SUPERFAMILY | 172 | 220 | 49 | 4.24E-18 | – | |
| Pfam | 172 | 217 | 46 | 1.8E-11 | ||
| SMART | 177 | 217 | 41 | 1.2E-6 | ||
| ProSiteProfiles | 177 | 217 | 41 | 11.958 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0270600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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