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IPR003711

Source: InterPro

Description

IPR003711 is a CarD-like/TRCF, RNAP-interacting domain.

<p>This is the RNA polymerase-interacting domain (RID) superfamily of transcription-repair-coupling factor (TRCF), CarD and CarD homologue in Myxococcus xanthus, called CdnL [[cite:PUB00101052], [cite:PUB00101051], [cite:PUB00040473], [cite:PUB00065411]]. CarD is a Myxococcus xanthus protein required for the activation of light- and starvation-inducible genes [[cite:PUB00008194]]. Furthermore, CarD is widely distributed among bacteria and represents a distinct class of RNAP binding proteins that regulate transcription and essential processes. TRCF couples transcription and DNA repair in bacteria in which the RID domain is essential for the RNAP release function [[cite:PUB00065411]].</p> <p>The structure of CarD presents a partly open barrel (tudor-like) topology. The last strand is interrupted by a turn of 3-10 helix.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj1g3v3930430.1
– PREDICTED: transcription-repair-coupling factor-like [Cicer arietinum] gi|502106943|ref|XP_004493106.1|
Domains
24
LotjaGi1g1v0636200.1
– ATP-dependent RNA helicase; TAIR: AT3G02060.1 DEAD/DEAH box helicase; Swiss-Prot: sp|F4JFJ3|Y3206_ARATH ATP-dependent DNA helicase At3g02060, chloroplastic; TrEMBL-Plants: tr|G7KY98|G7KY98_MEDTR DEAD-box-like helicase superfamily protein; Found in the gene: LotjaGi1g1v0636200
Domains
28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd18810 CDD 1 50.00