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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3930430 |
| Transcript ID | Lj1g3v3930430.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription-repair-coupling factor-like [Cicer arietinum] gi|502106943|ref|XP_004493106.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 818 | 753 | 0 | – | |
| PANTHER | 66 | 818 | 753 | 0 | – | |
| SUPERFAMILY | 133 | 201 | 69 | 5.62E-10 | ||
| SMART | 138 | 240 | 103 | 8.10E-15 | ||
| Pfam | 139 | 239 | 101 | 1.40E-15 | ||
| Gene3D | 253 | 451 | 199 | 3.20E-53 | ||
| SMART | 263 | 455 | 193 | 3.90E-31 | ||
| ProSiteProfiles | 282 | 444 | 163 | 20.978 | ||
| CDD | 289 | 426 | 138 | 4.19E-22 | – | |
| Pfam | 289 | 427 | 139 | 6.50E-16 | ||
| SUPERFAMILY | 316 | 589 | 274 | 6.61E-56 | ||
| ProSiteProfiles | 453 | 619 | 167 | 15.414 | ||
| CDD | 453 | 583 | 131 | 1.69E-25 | – | |
| Gene3D | 464 | 620 | 157 | 6.80E-35 | ||
| Pfam | 468 | 574 | 107 | 5.50E-18 | ||
| SMART | 491 | 575 | 85 | 8.50E-18 | ||
| SUPERFAMILY | 661 | 807 | 147 | 5.10E-12 | – | |
| SMART | 670 | 768 | 99 | 0.0053 | ||
| Pfam | 672 | 757 | 86 | 3.00E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of Lj1g3v3930430.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3930430.1, powered by CORGI.
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