Domain Predictions — View

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IPR004483

Source: InterPro

Description

IPR004483 is a Helicase SMUBP-2/Hcs1-like.

<p>Proteins in this entry belong to the DNA2/NAM7 helicase family, including SMUBP-2 from humans, DNA polymerase alpha-associated DNA helicase A (also konwn as Hcs1) from budding yeasts and some putative helicases from prokaryotes.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of GO:0003676
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639

Associated Lotus transcripts 2

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0721200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp\|Q60560\|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A0B2PI38\|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR004483 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF8 SM00382 SM00487 SSF52540 TIGR00376 cd18044 cd18808	19
LotjaGi1g1v0721200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp\|Q60560\|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A0B2PI38\|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR004483 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF8 SM00382 SM00487 SSF52540 TIGR00376 cd18044 cd18808	19

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18808	CDD	1	50.00