Domain Predictions — View

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cd18808

Source: CDD

Description

SF1_C_Upf1

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 27

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0101200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|G7KFQ2\|G7KFQ2_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101200	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 cd18042 cd18808 mobidb-lite	12
LotjaGi1g1v0101500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O94387\|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr\|G7KFN9\|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 cd18042 cd18044 cd18808	12
LotjaGi1g1v0101500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O94387\|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr\|G7KFN9\|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 cd18042 cd18044 cd18808	12
LotjaGi1g1v0101500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O94387\|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr\|G7KFN9\|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 cd18042 cd18044 cd18808	12
LotjaGi1g1v0604000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA replication helicase dna2, putative; TAIR: AT1G08840.4 DNA replication helicase; Swiss-Prot: sp\|Q8QHA5\|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr\|A0A072TZB7\|A0A072TZB7_MEDTR DNA replication ATP-dependent helicase Dna2; Found in the gene: LotjaGi1g1v0604000	Domains G3DSA:3.40.50.300 IPR014808 IPR022765 IPR026851 IPR027417 IPR041677 IPR041679 PF01930 PF08696 PF13086 PF13087 PTHR10887 PTHR10887:SF433 SSF52540 SignalP-TM cd18041 cd18808 mobidb-lite	18
LotjaGi1g1v0604000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA replication helicase dna2, putative; TAIR: AT1G08840.2 DNA replication helicase; Swiss-Prot: sp\|Q8QHA5\|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr\|K7KYE7\|K7KYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0604000	Domains G3DSA:3.40.50.300 IPR026851 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF433 SSF52540 cd18041 cd18808	12
LotjaGi1g1v0604000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA replication helicase dna2, putative; TAIR: AT1G08840.3 DNA replication helicase; Swiss-Prot: sp\|Q8QHA5\|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr\|K7KYE7\|K7KYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0604000	Domains G3DSA:3.40.50.300 IPR022765 IPR026851 IPR027417 IPR041677 IPR041679 PF01930 PF13086 PF13087 PTHR10887 PTHR10887:SF433 SSF52540 cd18041 cd18808	14
LotjaGi1g1v0721200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp\|Q60560\|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A0B2PI38\|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR004483 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF8 SM00382 SM00487 SSF52540 TIGR00376 cd18044 cd18808	19
LotjaGi1g1v0721200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp\|Q60560\|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A0B2PI38\|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR004483 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF8 SM00382 SM00487 SSF52540 TIGR00376 cd18044 cd18808	19
LotjaGi2g1v0024500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O60306\|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr\|I1NCV6\|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500	Domains G3DSA:3.40.50.300 IPR026300 IPR027417 IPR032174 IPR041677 IPR041679 PF13086 PF13087 PF16399 PIRSF038901 PTHR10887 PTHR10887:SF5 SSF52540 cd17935 cd18808 mobidb-lite	16
LotjaGi2g1v0024500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O60306\|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr\|I1NCV6\|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500	Domains G3DSA:3.40.50.300 IPR026300 IPR027417 IPR032174 IPR041677 IPR041679 PF13086 PF13087 PF16399 PIRSF038901 PTHR10887 PTHR10887:SF5 SSF52540 cd17935 cd18808	15
LotjaGi2g1v0417100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of nonsense transcripts 1-like protein; TAIR: AT5G47010.1 RNA helicase; Swiss-Prot: sp\|Q9FJR0\|RENT1_ARATH Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr\|I1J9N5\|I1J9N5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0417100	Domains G3DSA:2.40.30.230 G3DSA:3.40.50.300 IPR006935 IPR014001 IPR018999 IPR027417 IPR040812 IPR041677 IPR041679 PF04851 PF09416 PF13086 PF13087 PF18141 PS51192 PTHR10887 PTHR10887:SF451 SSF52540 cd18039 cd18808 mobidb-lite	21
LotjaGi2g1v0452700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT1G05460.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q8GYD9\|SDE3_ARATH Probable RNA helicase SDE3; TrEMBL-Plants: tr\|A0A0B2RHL6\|A0A0B2RHL6_GLYSO Putative RNA helicase SDE3; Found in the gene: LotjaGi2g1v0452700	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF444 SSF52540 cd18038 cd18808 mobidb-lite	12
LotjaGi3g1v0000400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q00416\|SEN1_YEAST Helicase SEN1; TrEMBL-Plants: tr\|A0A0R0FU35\|A0A0R0FU35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0000400	Domains Coil G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF382 SSF52540 cd18042 cd18808 mobidb-lite	13
LotjaGi3g1v0000400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q00416\|SEN1_YEAST Helicase SEN1; TrEMBL-Plants: tr\|A0A0R0FU35\|A0A0R0FU35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0000400	Domains Coil G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF382 SSF52540 cd18042 cd18808 mobidb-lite	13
LotjaGi3g1v0309700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|G7KFP7\|G7KFP7_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi3g1v0309700_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF13086 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 TRANSMEMBRANE cd18042 cd18808	14
LotjaGi3g1v0415800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G30100.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O94387\|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr\|V7AP63\|V7AP63_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415800	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF455 SSF52540 cd18042 cd18808 mobidb-lite	12
LotjaGi3g1v0415800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G30100.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O94387\|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr\|V7AP63\|V7AP63_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415800	Domains G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF455 SSF52540 cd18042 cd18808 mobidb-lite	12
LotjaGi4g1v0018100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|O15050\|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi4g1v0018100	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18808 mobidb-lite	21
LotjaGi4g1v0029400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G15570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|V7B556\|V7B556_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0029400	Domains G3DSA:3.40.50.300 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF382 SM00487 SSF52540 cd18042 cd18808 mobidb-lite	14
LotjaGi4g1v0029400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G15570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|V7B556\|V7B556_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0029400	Domains G3DSA:3.40.50.300 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF382 SM00487 SSF52540 cd18042 cd18808 mobidb-lite	14
LotjaGi4g1v0178500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|I3S0V2\|I3S0V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0178500	Domains G3DSA:3.40.50.300 IPR027417 IPR041679 PF13087 PTHR10887 PTHR10887:SF469 SSF52540 cd18808	8
LotjaGi5g1v0209800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q8BV79\|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18807 cd18808 mobidb-lite	22
LotjaGi5g1v0209800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|Q8BV79\|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr\|A0A0B2R102\|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR014016 IPR027417 IPR034739 IPR039904 IPR041677 IPR041679 NON_CYTOPLASMIC_DOMAIN PF00580 PF13086 PF13087 PS51198 PTHR21529 SSF52540 TRANSMEMBRANE cd17934 cd18042 cd18807 cd18808 mobidb-lite	22
LotjaGi6g1v0000200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|P38935\|SMBP2_HUMAN DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A151RV11\|A0A151RV11_CAJCA DNA-binding protein SMUBP-2; Found in the gene: LotjaGi6g1v0000200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF3 SM00382 SM00487 SSF52540 cd18044 cd18808	17
LotjaGi6g1v0000200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA-binding protein SMUBP-2; TAIR: AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|P38935\|SMBP2_HUMAN DNA-binding protein SMUBP-2; TrEMBL-Plants: tr\|A0A151RV11\|A0A151RV11_CAJCA DNA-binding protein SMUBP-2; Found in the gene: LotjaGi6g1v0000200	Domains Coil G3DSA:2.40.30.270 G3DSA:3.40.50.300 IPR003593 IPR014001 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR43788 PTHR43788:SF3 SM00382 SM00487 SSF52540 cd18044 cd18808	17
LotjaGi6g1v0050000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|B6SFA4\|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr\|G7J7W5\|G7J7W5_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi6g1v0050000	Domains Coil G3DSA:3.40.50.300 IPR027417 IPR041677 IPR041679 PF13086 PF13087 PTHR10887 PTHR10887:SF464 SSF52540 cd18042 cd18044 cd18808	13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18808	CDD	1	3.70