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IPR006070

Source: InterPro

Description

IPR006070 is a Threonylcarbamoyl-AMP synthase-like domain.

<p>This domain has been shown to bind preferentially to dsRNA [[cite:PUB00011086]]. This domain is found in Sua5 ([swissprot:P32579]) and carbamoyltransferase HypF. The Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA [[cite:PUB00054278]]. Sua5 has been shown to be required for translational regulation [[cite:PUB00063344]] and telomere recombination in yeast [[cite:PUB00063343]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003725
Molecular function Double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.
Subterm of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj1g3v3631710.1
– PREDICTED: yrdC domain-containing protein, mitochondrial-like [Cicer arietinum] gi|502169486|ref|XP_004514618.1|
Domains
9
Lj3g3v3085850.1
– PREDICTED: yrdC domain-containing protein, mitochondrial-like [Cicer arietinum] gi|502145338|ref|XP_004505988.1|
Domains
8
Lj5g3v0642620.1
–
Domains
8
LotjaGi1g1v0606500.1
– Threonylcarbamoyl-AMP synthase; TAIR: AT3G01920.1 DHBP synthase RibB-like alpha/beta domain-containing protein; Swiss-Prot: sp|P45103|Y1198_HAEIN Uncharacterized protein HI_1198; TrEMBL-Plants: tr|I1N7S3|I1N7S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606500
Domains
8
LotjaGi2g1v0360300.1
– Threonylcarbamoyl-AMP synthase; TAIR: AT5G60590.2 DHBP synthase RibB-like alpha/beta domain-containing protein; Swiss-Prot: sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial; TrEMBL-Plants: tr|A0A1J7HHA6|A0A1J7HHA6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0360300
Domains
9
LotjaGi2g1v0360300.2
– Threonylcarbamoyl-AMP synthase; TAIR: AT5G60590.2 DHBP synthase RibB-like alpha/beta domain-containing protein; Swiss-Prot: sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial; TrEMBL-Plants: tr|V7AFE6|V7AFE6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0360300
Domains
9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR00057 TIGRFAM 1 16.67