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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0360300 |
| Transcript ID | LotjaGi2g1v0360300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Threonylcarbamoyl-AMP synthase; TAIR: AT5G60590.2 DHBP synthase RibB-like alpha/beta domain-containing protein; Swiss-Prot: sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial; TrEMBL-Plants: tr|V7AFE6|V7AFE6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0360300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:85792100..85798347) extracted from Lotus japonicus Gifu genome v1.2.
GAGACTAATCACAAACCCCCTGTCAGTGCATTAAGCGGTATGACGCTAACGAATGAAAAAAATTCCATTCGCAAGAGTTG AGAATTAAACCCTCAATCACTTACCACTTAAGAGACAAAGTGTGATTTGCATTCTGCGAAAAAAGAAAAAGGATAATGGA CCTGACTCAATCCAACCCATTTCTATTTATTCGGTTTGGACTTTTTTTCATCATAACCCGACCCACCGATGGTGACTATA AACCGTCAGATGCATCAAACGGTCAAGATGAATTGAGGTCATAAAACATAAAACGCTGTCGTTCTGATCACGCTCCAAAA GGAAAATTCTCTCAAACTGTCACCACTACTTTCTCTCGTGCTTTTCTGCTCTCACCCATCATACCCCGTCGCGCCGTGCG CCGCCGGACACATCGCCGTTCACCGTCGTGCCGCCGCGTCTTCTACCAACCACCGCATTGTATCGCGCCTCTTAGAACCC CCACCGCCTTGTCGCTCTGTTTCTCACTCAGGTAACGCTCTGTGCTAGTGCTGTATCGAAGTAGAACACGTTTGCTACTG GTTCTGGTTCTGGTTCTGGTGATGGAGCAGAGCATTGGTCAACGCAGATTCAGCAGCATAGAATGAATCTATCCTCACAA GGAAAGCTTCTTCTCAACGCTTCCCTCTTTCCCAATTTCTCCTTCTTCCCAGGTCATCTTCATTCTTCACGCACTCTCTT CCTCTCTCGTGCATTTCGTGGTCGAATTTCAACCCAATACAGTTCTATACATTGAAACTTGAACTGGGTCTTCGTTATTT TTTGTTAATGTTGCCGTTTTTGGTGATAGAACTTGCTCATTGAACCAGTGGTGTTTGTGTTTTTCAGGGGTTCGGAGGTT GGCTCTTGTTCCACGTTTGCCACAGAGTCAAGGGCTGAGAAGGGTTTTACCTAAAAACGTGGATTGGAGGATGGATAGTG GTGACTTGGGTCTTGAATTCAAGGCTGGGGTGGTTCATCCAGCAAGGGATGATTATGCGGCGGAGGCAGTTGAAGCTTTG AAAGCTGGGAAGGTTATTGCAGTGCCCACTGATACACTCTATGGATTTGCTTGTGATGCTTGGTATGTTTGCTTTTTGCA TGTTATGTTTGAGAAAAAGTGATTGTTTGTGCTTTTACTATCAGAATGAAGAAGCTATACTATAAGGATTTAGTAATAAT GAATTTTAGCTGCACCACTAGGATAATGTGATTTCAATGAATTTCTGTGACTGAGTAGAAATTTCTTTATTCAATTGCAT TCTGAATGTTTGTTAATTTGGTGTACCTTCTATTGGGGCATATTGGCAGCTCATTGGAAGCAGTTAACAGGATTTATGAG ATTAAAGGCAGAAAGCATACGAGCCCTCTTGCTATTTGTGTTGGTGATGTATCCGACATAAACCGGTTTGCTGTCACCGA CCATTTACCTCATGGTTTGCTTGATTCCCTCCTACCAGGGCCTGTTACAGTTGTTCTGAAACGAGGTTTGTCTGTCATAT ATTTATTTTGTGTGTATTCAAAATGAAATTTACAGAAAGTATGTAGAATAATCTATGAAATAGTTTGCTTAAAGCAACAA TTTTGTCCTGTTTCTTTAATCCATTTCGTCAACATATCTTCTTTGTAAGGTAGTCAAAATTGGGAACTATGCCTTTAATC GGGAGAGGGTGTTAATCATTAATCGCATAATTGTAAGATTTAGCAAAATTCCTGTGTGTGTGTGTGTGTATCAAATAGAC ACTTCAAATAACTAGAAACACTTGAATAAAGTTGTACTCATAATAACTCATAGTTCATAGGAATGTCATACCCAAACAGC CTCGGTACCAGCCCCAGTTCCAGCACTGCCACTTGAGTTACCAGCCTCATTCCCCGCCAGTGGACGAGCTTGTCGACAGT GTCAAGAGCATTGTCGCCGGTGCATTGGGGGAGAGAAGGGGCTAGACTGCTAAAAAAACTTAGGGGTTTCTTGAAACAGG ATTTGTTTTTGTAGTGAGTCAAGCCCGTATCACATGGGCTGAGCTTAATCACATAATTGGTATTAAGGTGCGAATATGCA ATTTTAATCACGTTTAAGGTTGGATTAAGCCAGAAAAGGATTATGCTACTGATTTTAATAGCCCAGGTGCATTCTAATGG CATAATTGTAAGATGAAGGTATTAAAATTGGGATTATGACTAAAATGCCTTTTTGAACCCAAGATTTTGTTTTGAAGATC CTTATTGTCTGATTGTGTGCTTTGCTATTTTACAGGAGAGTCGAGCATTCTTGAACAATCTTTGAACCCAGGATTTGATA GTATAGGAGTTAGAGTGCCTGATAGCAATTTCATTAGAGTCATTGCCCGTGGTTCAGGAACTGCTCTGGCCCTTACTAGT GCAAACTTGAGTGGACAGCCAAGTAGTGTTTGCATCAAAGATTTTGAGAAACTCTGGGAGCATTGTGCTTTTGTTTTCGA TGGCGGCTTGCTTCCATCAGGTCGTGCGGGCTCAACAGTTGTGGACCTCACTACACCACACAAATACAAGATACTAAGAC CTGGAAGGTACCTGAGCTTTTAACTCTTTAATGCTATTATTTAGACCTGGATAGTGTTATGTCTGGTGCTGATGCCAACA ACTATTTCTGTCATATAATCATCTTTTATCTAATATAGGATGAAAATGGTGGGACTTTTATGTTCTAATATTTCATCATG GATATCTAAAAAAATGAATGGTACTAGATTCATCTCCAGTTAGAAATTACTTTCCCTTCCTTTCACCAATGGGTCCTCTT TGCAAAATGCATAGGAAATTCAGTAATCATTTATGTTTGGAACTTTTTAAGTAATGAAAAATGGCTCAAAAATACAGGTT TTGTCACCCATATGATAGAGAAATATCTATCAATTGAGGTTACTTGTTGTGTATAAACCAATTCTTTGACTACTATGCAT ATTTGATATTTTATAGATATGAACTTATATTGATATGTTGCATTACAGTTTGTATTGAATTTGTCTTTGTTAACCTGCTA TTTGCAGTGCAAAGGAAGAGACCGTTGCCATCTTGGAGAAGCATTCTTTCGTTGAAGCGGATACGAGGTGACACGGTGAC ACCAATATAAACGGATGTTAGCTCTCACTTTGAGATAAAAAGTGAACGGACTTCTTCTTATGAATTGGGATAAAAGTTTG TTAACATTACACTCAATCATCTGGTATCCAAACACAAATGAAGTGCAATTCATCTTTCAGTGATTCATTCTTTCACGGCA AAGAACAATTCTTTGGCTTGGACATGTGAGATACTATCGCCAGGCCTATTTCTTTCTAATATTGTCTATACATTAAACAT TATTGTGCCACGTGATTCTATAGTTTATTATATTCTGCAACTATTAAATCAGGTTTTGAGAGCCTAAATGTTAAAAGGTT ACACTGACGATTATCTTAATTTATGAAGATGGACTTTGTGAAAGCACTCTATCTCTATGCAGATATGCTTATTTCATCAA CATGTGGGTATTGTCTGTGCACTAGCCTATTCAACCCAACTATTCTTAGAGCAGTACAATTATTTTTATAGCATGAGAGT GAATGCATTGTTGTCTGAAAAGCTATGGTTGAGTGCTGAGGAGATTAAGTACGTGCTTAGCAACTTGTTAGATTTAGTTG AGATATCTTGATTATAAGTTTGAAGCTTCACCTTCAATAGTGACCAAGTAGTTCTATAGTTCACTTCATTGAAAAATTGA AACAAATCAATACAAATCACAAACCTCCATTCACAACCCCAATCACAGCTGTAACGTCAACTGAAGAAAGAAAAACATGG ATGCCCGTGAGAAGTGGTTGAAAAGAAATTAAAAAGTGAAAAGAAAGAAAATGACATGATTTTGTGAATGAAGAGAAAAC GAGAAGAAAGAAAAGTTGTTATTAATCTTCTTTTATTTGGTTGCATAAAAACTAATATGAAAAAATATATTTTACATACC AAATTTAGATTTATATTCGATCAGATGCTGACTGTAGCAAAAAATTGATCCTGCCAATTTGATTTTTTTTCCCTTACCTC TAGCTGCCACAACTACATCGTGGATTTGAAGCTTAATATGTTTTTTAGACTACTGATATCTAAACATCCGAAATCGACAT CCATCCTACATACTTGTGGCGGTTCTTAGCTGCCACAAATATTTGTGGGGTTAAAAATCACCATCTTTGTTCAATATCCA ATCTGTTCACTTATCATTCTTTGTTTTTTGAAGTTGTCTTTAGCACTTATTTACTCATTGTTGGAAACTCGTACATTTGT ATGATGACCATAACACAAAGGGTAATTATGTCCTGAATCACTTTTCAACTGTCTATAATATCTTACCTCTTTTCTAATTC TTCGCTTTTAGAAGAGAGAAATTTTATAAGATCTACACTTTTCCTTTCTTTTTTTTTGTACACAACTAAATATAAAGAAA AGAAACTAGACGTGTTGTTTGTGGTGTACGTTACATTCACTGTGTTGTTTAGTAGTGCTCATGTCTCGTGTAACTTAGCA TTTTTCTAAAGGAAAATCTTATTTTCTCAAGTCTCAACCATGTTTTTCCATTTTTGGTGCTCGACCATCATTTTCTTTCT TCTTGTTCTCTATCATCCCAAACACAGTGGAAAAGCTGATCTTCAAAAGCAATCATGCAGCTGACTTTTTAACTAAAACA ATCAAAATAATACTGTGAAAAATGAAGCTATACATTTTTTTGAAAATTATACTATTTACCATTTACATGCTATTGCACTC CTCAACTGTTATGGAGGGTAATTAAAATTTAAAGGATAAAATCTTGCTCCTTTTGGTACATAAAGATCTTGTGTCGTTAA ATTGTGTTTCAATTTCCTATCCCACTAATAAAATCTTATTACGTCGATTGAATAAAAAAAACGGTGACGTACTTATTAAA TACAAACACCTACTTGATTTCTCATAATCCAAGTTGAGAATAACGTGTACATAATAATATTATTATAATTTCTATATGTA ACCCTTCGTTTTAATTTGATGCATAATTTTGCTGGCTTATAATTTTAGCTTACCATGTCACAAATTAATCAATAATAATA AGTGGAAATTCAAAATTGCACTCACTATACTGAAATTGAAATTGAAATTAAAACAAATAAATACTACACAATGAGTGCCC TTGAGAGTAATCCAAAATCAAGACACGAATATATAGGTTTCCGCAATCTATGCAAGACTAATTCATAAAATGATCATAGT TTCAAATCTGAAAAAAAAATGTCGCGATTATTTAGAGAGTAGCAAGAATCAATAATCAAATTGAGAGAACCCTAGAATTC TGCATAGTGTATATAACCTGTGATCGAAATCAATGCTTCTACAGAAGTTCTCTCCTTGCTGCATAACCATACTGAGATCG CTGCACATTCTGCCGGCGCTTCTTGTACACCATCGCTGCCACTACAATCGCACCTACACCTACGATAACTCCCACCGCAA TCCCCGCCTTCTTGCCGGAACTCGTTCCTCCACCGGATGATTTCGCGACCACATCGCCGGCGTGATTGACTTCGCCATCA TTTGCATCCGCCGGTGACGGTGAAGGAGAATCAGAGCTCTCAGGAGAAGGTGCGGGAGGCGAATCGGGACGAGGAGGCGC CGCCGGAGCCGGGGAATTGGCAGGGGAGGGGTTTGGAGAAGGAGTTAAATGTAACCCGGCGAATGAATTCGGCGCCGGAG CCGGTGAATCGGCGGCGGAGGGAGTGATGTTGACTAGCAAAGAAATGAGTAAGAGATGAAGAACGAGAACAGCGGAGAAT CCTGCAGGATTCTGATTCGGATTCGCCATTGATGGATGAGAAGATTGAATTTGAATCGGAATTGAAAAACAGTGTTGGAT CTGAAAATTTGAAATGGCGGTGAAAGAAGAAGAAGAAGAAGAAGAAAACGGAACGTGTGTGAATGGAAACTGATTTGAAA TCAAAGTGGATCTGAAAAAGTGAGAGATTACAGATTGATGGTGCGGTTTATAAGGGGTTGTGATCTCGATAAACGTGTGA ATTAAGGGTGGAGATTGAAGGAAAATCTTATCAAGGGCTAGTTACATTGTGACACGTGGAGAGTGTGTAGGTGTGGTAAA TGCAGTGCGATGTAGGGGAAAATTGGTACTTGTTGGAATTGGAAGCTTCGTGAGTGAAAAATGGGTATTTTCTGATATTC TTCTCCTC
CDS sequence (LotjaGi2g1v0360300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCTATCCTCACAAGGAAAGCTTCTTCTCAACGCTTCCCTCTTTCCCAATTTCTCCTTCTTCCCAGGGGTTCGGAG GTTGGCTCTTGTTCCACGTTTGCCACAGAGTCAAGGGCTGAGAAGGGTTTTACCTAAAAACGTGGATTGGAGGATGGATA GTGGTGACTTGGGTCTTGAATTCAAGGCTGGGGTGGTTCATCCAGCAAGGGATGATTATGCGGCGGAGGCAGTTGAAGCT TTGAAAGCTGGGAAGGTTATTGCAGTGCCCACTGATACACTCTATGGATTTGCTTGTGATGCTTGCTCATTGGAAGCAGT TAACAGGATTTATGAGATTAAAGGCAGAAAGCATACGAGCCCTCTTGCTATTTGTGTTGGTGATGTATCCGACATAAACC GGTTTGCTGTCACCGACCATTTACCTCATGGTTTGCTTGATTCCCTCCTACCAGGGCCTGTTACAGTTGTTCTGAAACGA GGAGAGTCGAGCATTCTTGAACAATCTTTGAACCCAGGATTTGATAGTATAGGAGTTAGAGTGCCTGATAGCAATTTCAT TAGAGTCATTGCCCGTGGTTCAGGAACTGCTCTGGCCCTTACTAGTGCAAACTTGAGTGGACAGCCAAGTAGTGTTTGCA TCAAAGATTTTGAGAAACTCTGGGAGCATTGTGCTTTTGTTTTCGATGGCGGCTTGCTTCCATCAGGTCGTGCGGGCTCA ACAGTTGTGGACCTCACTACACCACACAAATACAAGATACTAAGACCTGGAAGTGCAAAGGAAGAGACCGTTGCCATCTT GGAGAAGCATTCTTTCGTTGAAGCGGATACGAGGTGA
Protein sequence (LotjaGi2g1v0360300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLSSQGKLLLNASLFPNFSFFPGVRRLALVPRLPQSQGLRRVLPKNVDWRMDSGDLGLEFKAGVVHPARDDYAAEAVEA LKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLKR GESSILEQSLNPGFDSIGVRVPDSNFIRVIARGSGTALALTSANLSGQPSSVCIKDFEKLWEHCAFVFDGGLLPSGRAGS TVVDLTTPHKYKILRPGSAKEETVAILEKHSFVEADTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 276 | 239 | 6.4E-119 | – | |
| PANTHER | 38 | 276 | 239 | 6.4E-119 | – | |
| Gene3D | 66 | 270 | 205 | 1.3E-56 | – | |
| ProSiteProfiles | 71 | 259 | 189 | 26.245 | ||
| TIGRFAM | 73 | 264 | 192 | 2.3E-42 | ||
| SUPERFAMILY | 73 | 263 | 191 | 7.94E-49 | ||
| Pfam | 79 | 257 | 179 | 2.5E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded RNA binding | Interacting selectively and non-covalently with double-stranded RNA. |
Expression pattern of LotjaGi2g1v0360300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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