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IPR008543

Source: InterPro

Description

IPR008543 is a Uncharacterised protein family Ycf2.

<p>This family consists of chloroplast encoded Ycf2, which is around 2000 residues in length. The function of Ycf2 is unknown, though it may be an ATPase. Its retention in reduced chloroplast genomes of non-photosynthetic plants, e.g. Epifagus virginiana (Beechdrops), and transformation experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis [[cite:PUB00011516]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0009507
Cellular component Chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of

Associated Lotus transcripts 4

Transcript Name Description Predicted domains Domain count
Lj0g3v0053799.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
Domains
7
Lj4g3v1330780.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
Domains
8
Ljchlorog3v0010870.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
Domains
7
LotjaGi2g1v0113100_LC.1
– Protein Ycf2; TAIR: ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core (ChrC); Swiss-Prot: sp|Q9B1K6|YCF2_LOTJA Protein Ycf2; TrEMBL-Plants: tr|B9SB43|B9SB43_RICCO Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0113100_LC
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 25.00