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GO:0009507

View this GO term in other databases

Overview

Field Value
Namespace Cellular component
Short description Chloroplast
Full defintion A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
Subterm of

Relationships

The relationship of GO:0009507 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN

· ISBN: 0471245208

, · pages

Associated Lotus transcripts 45

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0050699.1
– Maturase K [Lotus japonicus] gi|13518419|ref|NP_084779.1|
GO terms
2
Lj0g3v0053799.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
GO terms
2
Lj0g3v0062999.1
– PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502160849|ref|XP_004511928.1|
GO terms
5
Lj0g3v0270919.1
– PREDICTED: elongation factor G, chloroplastic-like [Glycine max] gi|356563292|ref|XP_003549898.1|
GO terms
3
Lj1g3v2095640.1
– PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Cicer arietinum] gi|502131726|ref|XP_004501081.1|
GO terms
5
Lj1g3v3330180.1
– PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1|
GO terms
1
Lj1g3v3330180.2
– PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1|
GO terms
1
Lj1g3v3904290.1
– PREDICTED: light-regulated protein-like [Cicer arietinum] gi|502106837|ref|XP_004493072.1|
GO terms
1
Lj1g3v4446910.1
– PREDICTED: sulfate transporter 3.1-like [Glycine max] gi|356504955|ref|XP_003521258.1|
GO terms
3
Lj1g3v4451560.1
– PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cicer arietinum] gi|502109878|ref|XP_004493748.1|
GO terms
3
Lj1g3v5021040.1
– Violaxanthin de-epoxidase, chloroplastic-like [Glycine max] gi|359806202|ref|NP_001240949.1|
GO terms
3
Lj2g3v1874610.1
– PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502152894|ref|XP_004509142.1|
GO terms
5
Lj2g3v2410330.1
– PREDICTED: protein TIC110, chloroplastic-like [Cicer arietinum] gi|502096320|ref|XP_004490697.1|
GO terms
1
Lj3g3v3553970.1
– PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Cicer arietinum] gi|502144378|ref|XP_004505675.1|
GO terms
4
Lj3g3v3553980.1
– PREDICTED: signal recognition particle 43 kDa protein, chloroplastic-like [Glycine max] gi|356538524|ref|XP_003537753.1|
GO terms
4
Lj4g3v0684250.2
– PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356521657|ref|XP_003529470.1|
GO terms
2
Lj4g3v1330780.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
GO terms
2
Lj5g3v1003430.1
– PREDICTED: sulfate transporter 3.1-like [Glycine max] gi|356536292|ref|XP_003536673.1|
GO terms
3
Lj5g3v2240910.1
– PREDICTED: lipoyl synthase, chloroplastic-like [Glycine max] gi|356575490|ref|XP_003555873.1|
GO terms
4
Lj6g3v0217170.2
– PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] gi|356547583|ref|XP_003542190.1|
GO terms
2
Ljchlorog3v0010870.1
– Ycf2 [Lotus japonicus] gi|13518480|ref|NP_084839.1|
GO terms
2
LotjaGi1g1v0109400.1
– Chloroplast inner envelope family protein; TAIR: AT1G06950.1 translocon at the inner envelope membrane of chloroplasts 110; Swiss-Prot: sp|O24303|TI110_PEA Protein TIC110, chloroplastic; TrEMBL-Plants: tr|I1MBI6|I1MBI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0109400
GO terms
1
LotjaGi1g1v0109400.2
– Chloroplast inner envelope family protein; TAIR: AT1G06950.1 translocon at the inner envelope membrane of chloroplasts 110; Swiss-Prot: sp|O24303|TI110_PEA Protein TIC110, chloroplastic; TrEMBL-Plants: tr|A0A151U0Y1|A0A151U0Y1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0109400
GO terms
1
LotjaGi1g1v0410700_LC.1
– 50S ribosomal protein 6, chloroplastic; TAIR: AT5G17870.1 plastid-specific 50S ribosomal protein 6; Swiss-Prot: sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic; TrEMBL-Plants: tr|A0A0S3RCL5|A0A0S3RCL5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410700_LC
GO terms
5
LotjaGi1g1v0556500.1
– Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp|B9HQZ6|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7AUH7|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500
GO terms
1
LotjaGi1g1v0556500.2
– Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp|B9HQZ6|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7AUH7|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500
GO terms
1
LotjaGi1g1v0568800.1
– Multiple chloroplast division site 1, putative; TAIR: AT1G20830.1 multiple chloroplast division site 1; Swiss-Prot: sp|Q8GWA7|MCD1_ARATH Protein MULTIPLE CHLOROPLAST DIVISION SITE 1; TrEMBL-Plants: tr|A0A0L9V9H6|A0A0L9V9H6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0568800
GO terms
2
LotjaGi1g1v0787600.1
– Violaxanthin de-epoxidase; TAIR: AT1G08550.1 non-photochemical quenching 1; Swiss-Prot: sp|Q9SM43|VDE_SPIOL Violaxanthin de-epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A151TXT8|A0A151TXT8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0787600
GO terms
3
LotjaGi2g1v0113100_LC.1
– Protein Ycf2; TAIR: ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core (ChrC); Swiss-Prot: sp|Q9B1K6|YCF2_LOTJA Protein Ycf2; TrEMBL-Plants: tr|B9SB43|B9SB43_RICCO Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0113100_LC
GO terms
2
LotjaGi2g1v0401800.1
– Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1LHE5|I1LHE5_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi2g1v0401800
GO terms
5
LotjaGi3g1v0038700.1
– Light-regulated protein; TAIR: AT3G26740.1 CCR-like protein; Swiss-Prot: sp|Q03200|LIRP1_ORYSJ Light-regulated protein; TrEMBL-Plants: tr|A9PJH2|A9PJH2_9ROSI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0038700
GO terms
1
LotjaGi4g1v0089800.1
– Protein N-methyltransferase; TAIR: AT1G14030.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A072UM69|A0A072UM69_MEDTR Rubisco large subunit N-methyltransferase; Found in the gene: LotjaGi4g1v0089800
GO terms
2
LotjaGi4g1v0105000.1
– Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1MVX7|I1MVX7_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi4g1v0105000
GO terms
5
LotjaGi4g1v0209900.1
– Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A151SKP1|A0A151SKP1_CAJCA Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900
GO terms
3
LotjaGi4g1v0209900.2
– Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900
GO terms
3
LotjaGi4g1v0209900.3
– Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900
GO terms
3
LotjaGi4g1v0209900.4
– Elongation factor G; TAIR: AT1G62750.1 Translation elongation factor EFG/EF2 protein; Swiss-Prot: sp|P34811|EFGC1_SOYBN Elongation factor G-1, chloroplastic; TrEMBL-Plants: tr|A0A0R0FND6|A0A0R0FND6_SOYBN Elongation factor G, chloroplastic; Found in the gene: LotjaGi4g1v0209900
GO terms
3
LotjaGi4g1v0404300.1
– Violaxanthin de-epoxidase-like protein; TAIR: AT2G21860.1 violaxanthin de-epoxidase-like protein; Swiss-Prot: sp|Q40593|VDE_TOBAC Violaxanthin de-epoxidase, chloroplastic; TrEMBL-Plants: tr|A0A0B2S1H5|A0A0B2S1H5_GLYSO Violaxanthin de-epoxidase, chloroplastic; Found in the gene: LotjaGi4g1v0404300
GO terms
3
LotjaGi5g1v0175300.1
– Photosystem II reaction center W; TAIR: AT2G30570.1 photosystem II reaction center W; Swiss-Prot: sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic; TrEMBL-Plants: tr|I3STR8|I3STR8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0175300
GO terms
3
LotjaGi5g1v0345100.3
– Lipoyl synthase; TAIR: AT5G08415.1 Radical SAM superfamily protein; Swiss-Prot: sp|B9RX57|LISC_RICCO Lipoyl synthase, chloroplastic; TrEMBL-Plants: tr|A0A0R4J646|A0A0R4J646_SOYBN Lipoyl synthase, chloroplastic; Found in the gene: LotjaGi5g1v0345100
GO terms
4
LotjaGi6g1v0000800.1
– NAD(P)H dehydrogenase 18; TAIR: AT5G43750.1 NAD(P)H dehydrogenase 18; Swiss-Prot: sp|Q9FG89|PNSB5_ARATH Photosynthetic NDH subunit of subcomplex B 5, chloroplastic; TrEMBL-Plants: tr|I3SQB7|I3SQB7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0000800
GO terms
2
LotjaGi6g1v0025400.1
– Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400
GO terms
2
LotjaGi6g1v0025400.3
– Rubisco methyltransferase family protein; TAIR: AT3G07670.1 Rubisco methyltransferase family protein; Swiss-Prot: sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|A0A0R0GH45|A0A0R0GH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0025400
GO terms
2
LotjaGi6g1v0313200.1
– Protein plastid transcriptionally active 12; TAIR: AT2G34640.1 plastid transcriptionally active 12; Swiss-Prot: sp|F4IHY7|PTA12_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12; TrEMBL-Plants: tr|G7IP39|G7IP39_MEDTR Plastid transcriptionally active protein; Found in the gene: LotjaGi6g1v0313200
GO terms
5
LotjaGi6g1v0313200.2
– Protein plastid transcriptionally active 12; TAIR: AT2G34640.1 plastid transcriptionally active 12; Swiss-Prot: sp|F4IHY7|PTA12_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12; TrEMBL-Plants: tr|A0A067GIV8|A0A067GIV8_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0313200
GO terms
5

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0090228
Biological process Positive regulation of red or far-red light signaling pathway 1 2.22