Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR013937

Source: InterPro

Description

IPR013937 is a Sorting nexin, C-terminal.

<p>This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain [interpro:IPR001683].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0289619.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin-16 [Medicago truncatula] gi\|357475543\|ref\|XP_003608057.1\|	Domains G3DSA:3.30.1520.10 IPR001683 IPR013937 PF00787 PF08628 PS50195 PTHR22999 PTHR22999:SF23 SM00312 SSF64268 cd06872 mobidb-lite	12
Lj0g3v0292789.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phox-associated domain,Phox-like,Sorting nexin isoform 1 [Theobroma cacao] gi\|508779532\|gb\|EOY26788.1\|	Domains CYTOPLASMIC_DOMAIN IPR013937 NON_CYTOPLASMIC_DOMAIN PF08628 PTHR22999 PTHR22999:SF19 TMhelix TRANSMEMBRANE mobidb-lite	9
Lj4g3v0526630.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin-16 [Medicago truncatula] gi\|357475543\|ref\|XP_003608057.1\|	Domains G3DSA:3.30.1520.10 IPR001683 IPR013937 PF00787 PF08628 PS50195 PTHR22999 PTHR22999:SF23 SM00312 SSF64268 cd06872 mobidb-lite	12
LotjaGi2g1v0009500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Sorting nexin-16; TAIR: AT2G15900.1 phox domain-containing protein; Swiss-Prot: sp\|Q8C080\|SNX16_MOUSE Sorting nexin-16; TrEMBL-Plants: tr\|I1ND24\|I1ND24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0009500	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.1520.10 IPR001683 IPR003114 IPR013937 IPR036871 NON_CYTOPLASMIC_DOMAIN PF00787 PF02194 PF08628 PS50195 PS51207 PTHR22999 PTHR22999:SF32 SM00312 SM00313 SSF64268 TMhelix TRANSMEMBRANE cd06872 mobidb-lite	21
LotjaGi3g1v0366200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phox-associated domain,Phox-like,Sorting nexin isoform 1; TAIR: AT1G15240.2 phox (PX) domain-containing protein; Swiss-Prot: sp\|P57768\|SNX16_HUMAN Sorting nexin-16; TrEMBL-Plants: tr\|V7AQ43\|V7AQ43_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0366200	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.1520.10 IPR001683 IPR003114 IPR013937 IPR036871 NON_CYTOPLASMIC_DOMAIN PF00787 PF02194 PF08628 PS50195 PS51207 PTHR22999 PTHR22999:SF28 SM00312 SM00313 SSF64268 TMhelix TRANSMEMBRANE mobidb-lite	20
LotjaGi4g1v0069700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Phox-associated domain,Phox-like,Sorting nexin isoform 2; TAIR: AT2G15900.1 phox domain-containing protein; Swiss-Prot: sp\|Q6PHS6\|SNX13_MOUSE Sorting nexin-13; TrEMBL-Plants: tr\|A0A0B2RCD7\|A0A0B2RCD7_GLYSO Sorting nexin-16; Found in the gene: LotjaGi4g1v0069700	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.1520.10 IPR001683 IPR003114 IPR013937 IPR036871 NON_CYTOPLASMIC_DOMAIN PF00787 PF02194 PF08628 PS50195 PS51207 PTHR22999 PTHR22999:SF32 SM00312 SM00313 SSF64268 TRANSMEMBRANE cd06872 mobidb-lite	20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	16.67