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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0361900 |
Transcript ID | LotjaGi3g1v0361900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp|A5D7H5|CASC3_BOVIN Protein CASC3; TrEMBL-Plants: tr|A0A072UG99|A0A072UG99_MEDTR CASC3/barentsz eIF4AIII-binding protein; Found in the gene: LotjaGi3g1v0361900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74563152..74568366) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACTTTGCTTAAATGAGTAAACTATATTGGATGATTGGATCCTGTGATAAACTAGATTGGATCGGCTCTTGAAATGA TAAACTAAAAAAAAAAAACTAGAACAGTTCGGTTATACTGATCATCACTGAGTGACTCATAAATCACCAGTTTAGGGTTT TCAGAGACCAACGAACTTGGATCCTAATACCCGCGCAATAACTCTATCCCCCTTTCAATTTCACCAGTTTAGGGTTTCTG TTGGATTCAATTTCTGTCTGTGGGTGTTGCTGCTATGGGTAGCACGGTTGAAGAACAAGAAGATGTTGAGTACGACAGTG ATCCGGAAGAGGCAAAGAGATCGCTGTCAATGCGGAGGCGTGAGGCTAGTGATGATGAAGAAGGCGAAGGCAGAGATAAG AGGGAAGAACAAGAAGAAGAAGAAGATCGTCGTGTTGGGATTCTTTCTGATGATGATTCTGATGGCGAGGGCGGTGTTGC TGACTATGATGACGGTGGTGATGAAATTGAAGAAGAAGAAGAAGAATTAGATGAAGAGGAGGAGGAGGTGGTGGTGTTTG ATGAAGTTGAACAAGAGGTGTATGAGGAGCTGGGTGCAGCAAGTGGGGTTGAGGGTTCAGTGATTGTGGCTAAGGAATCT GATGGTGATATTGGACCCCCTTTGGAAGATTCTGCTGAGGTTGATACAGAGGAGAAAAAGGAGAATGAACCATTTGCTGT GCCCACTGCTGGAGCTTTTTACATGCACGATGACCGTTTCAGGGACAATTCCGGTGCCGGCAACAGGTATTTTCATTGTG CCAATTATAACCTAGTGGAAACTCTCTGTACTGCATACCAAGTATATCCTAAAGTGTTATGTGGACTTGGGTTAACTTAG TTTTTTAGACTTGGTCGTAAAAATGCTTCATCTTTTATCAGGCGGGTACATGGTGGTGGAAAGAGACTGTGGGAGTCCAA AGATGACAGGAAATGGGGACATGATAAATTTGAGGAAATTACTTTCCAGGAAAGGCACTACCAAGAGGTATGGTCTTTAA ATTACTGTGTGGTCAAGCATGTTAGAAATATAGTATTCATGTGTCCTTTACCCAAGAGCTTAAGCTGTTGGGATAATTGG TTCTTGGCATGGTGCCCGAGTCTCTATGACTAAGTGGTCTAGAGTTTGATCCTTGTCGCCTCCAATTCTTCTAATAAGAA TTTGGATTTCAGCACATAGTAGGTAGGCATGTGCATTGTCCCCCGTTCGAACCCAAGTGGGCTCTTGCGTGAGGGGCGTG GTAGAAATATAATTGTTCATGTGTCCTTTACCCAATAGCTTAAGCTTTTGGGACAATTGGTTTATGACAAAGCATTCATT TTAGTTCAATTGCCTCTTTTTAGAGAAGATCTTCTCTTATGCTTTCTTTATAAAATTTAGAGGAGGGGAGCTTCTAATTA TCGAGGAGGCCGTGGTAATAACCGAGGCAGTGATCGTGGAGGACATATTCGAGGAAACAGGAGGGGATATAATGACAGTA GCCAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGGAGAGGGCCCCGAAGGTACGATCCTACCAATAGAAGCAGTGGTCCA GCTCCCCAAGTGCATAATAAACAGTAAGTAGAGATTGCATTTTTTAAAATTTGCTCGATTCACCATACCTGTGGTGTCAA GACTTTCTGATAAATATTGTTTTGTTTTACAAGATCTGGGAAGTCTTTTGAGAAAACTGCACCTGCTAGATCAGAGAGAA CTTCAACATCCGCTTCCAATGCAGAATCTAACCCTGTGCCTGCTAGGAAACAAGTGTCGTCAGCTTCAAATTTGAATTAT GCATCCCCGCCATTTTACCCATCAGGCTCTTCCAACAAAGAGATCAATTTGGTACAAAATAAAAATGCACAAGTTGGAAG CAATAGCAAGAACAATGCATTGCTTCAGGGAAAGAATCTTGTTGATTCCATCAACATAGACAAGGTGTACATTGATAAGT CCACCAGGCCATCTGTTGGAAAGCCTTCGAACAATGTGCATATAACACCACCTGGATCTTCTGGAGTCAATGCATTCCAT GCTTCTCTTCCCATGGCTGCTGGGACTGGGAGGGGTGTAGCAATCCCCATACAGATGAACTATCAGCCTGCACCCTCACA TAATCACGTAAATAAAGTTTCTCCAGGGCAACTCCAGTCTGTTCAGAGAAGTTATGCACCAGGAAGGTCCTCAACATCTG TGCAAGCTACTGCCCAACAGTTGGGCCATCGACCTAGTAGTAGGTCTCAATCTTCATCTCCCCCGAAAACATCTGCGTCA TTTAATTCACTTGATTCAGTAGATATGGACTCAGCATCAGAATCAGGTAAAACAAAAGGGGCTATGATTGGGAAGGGAAA GGGAGGTTCCCAGGGTACTGGACAGGGTTCTTTTGTTTATGGTGGGGCACAGGTAATGGGGGCTGCTGGAAATGGGGGTG TTAGTCATAGAGATCCAAACTTCCCAGCCACTCCTACCTTCTTGCCAGGTTTGTGTCTACATTGCTTACTTTTTGGTAAT TTTGGATCTAATCTACTAGTACAACTTCTGATGTTCGAAAGCAATTTTCTCATTCCGAAGTGATTGGAGGCTGTAACAAT ACTTTCCTGTGGAAAATCAAGTAATCATATCTTTAACGTTAAGATGTGTACTTTGACATCCTAAAGGCTCTGATTTGTTA CCACCCTTTTTGTGTGTGTTTTGTAGAGTCCTTTCAGAACAAGACCAAGAATTATTTATTTCATTTTTCTTATTTTGTTA ATGAATTTTTCTAATTTTAATTGTCTTTGGTGGGATGCAGTGATGCAATTCGGGGGCCAGCATCCTGGTGGTATGGGAGT TCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTGGTTCAGGAAAATCTGAAATGACATGGTACAGATATAAATATC TTAGTTTACGAGTGTTGAATAATGTTTGAGGACTAGCCAATTGACTTGCTTTAGTGCCTTTGTCATGGTTGCAATCTCTT TCTCTCCCATTTTCTATAAAGAACTGTCAATACTGATGACATGAAATCATGATAATACAAGTACTTTGGAGAGCTTCATG TGAACACGCGTCACAAATATTTAATGAGTCTTTTTTAAGAAAGAAAAACTCGTGTTCCTCTTATTTCCCTTTATATTGGA AATATAATAATTACTTCTTACTCTGGTTTAGGTTACCAGTCTTGGCTGGCGCTGCAGGAGCTTTGGGGGCTTCATACCCA TACCTTGCTGTTGATGGTGCTTACACTCGACAATCTGGACCGACCTCTGCAATGGGTAATTCAAGGTTGGTCAAGTTTGA TAGCATTGACATGTATTTCATATTATCATAATTTTATCACCATTTCCTTTTCAATATTACTGTAGCCTTTGGCTTGGTTC TTGATTTTGTTTTGTTATTGAACCTTTGCAGCAAGGAACATAATGATGTTAATAAAGCTAACAATGAATTGAAGCCACCA CAGAAATCTGGTAAAATTGATATTCCATTTCCATTATCGTTTACCCATTCTTAGATACTAACATTATCATTTGTAACTTA TCTGTCTGTAGAGCTTGTAAGTGATGAGTATGGACAACGGCAGAATAAGCCTCGAAGGCAAGTTGGATTGCAAAACCCTC ATTTAATAGTTCAATTGTTATTTTGTTTGTGTATTTATTGCACTGCTTCTGCAGATCTGCTTTTACTGATGTTTTACTTT GGGGTATTTGAGAGGCTTATTGGGAAGCTGATGCAAATTTTGGTTATTATTGGCCAGATTGTGTATTAGATATATAATTT CTATAAATTTTGGTTATTGTCTATGCAGATACTCAGAGATGAACTTTGGTCAGTAAAGTTTTATATATGATGCAGCTTGT TTGAAATAAGCAGATAAAGGTTTGTTATTTTCCGAATTGAATTGGGGTATATTATTTTTGGTATTCCGATTTTTTATTTT TGGTAATTTTGTTATGCAGGCCTTCCTCCAGGCCCTTTGTTCTCCAGCTTTTGATCTGGAGCACTCTGGGCTGCTATAAG TTTGAAGATGTTTTAGGTAAGCGCCTTGCTATATAGTGCGAAAGCGAAACTCACGGTCATTTTTTGTTTCCAGTATATAT CACTTTCTGAAATATAATTGAAGGAGTTGCCTTTTTCTAATGGAACTAATCACCAATCAAATTAAGTTGAAATTGATTCT TGTGTTTTGTACCTGTAAGAATTAGTATTTCTCTTTAGGTAACTCTGAACCTATATTCTTCTAGAATGTATATCCTTAGA ATTCAGCTTATCCCAAAAATAATTCAGAGGTGAGGATTACCCTACCATTTGTAAGGATTTATTTAGCCATCTCTGGTCAA TGTGGGACATCAATCGTATACAATGTCTATCTTTTCTTTTATTGAGAGGAGTCCTCCTAAAGTTTATCCTTGAAATTCAC CATTCAATAGAACCAACGTTTCCCTAATGGGAAATGAGTTGAGTTGGGGATTGGAAATTTTTGATACAAATATCTGCTAA TATATCGTTTTTGGAAATGATAGAACTTGCCTGTTGAATTTTTAGGGTTTGCATACTCTTTTTGGTCTCAAATATTAGGA TGGTTTTCCTTGGACTCATACATCTGTTTCATTCTTCTCCCCCTTCCCCACTTTCCTGTTGCAGTTATATGATGCCTGCT CATGCTGTTCCCCATTTCAGAAGTTATTACAGATTGACGGGTGGTAGTTGCTTGTTTAGTTTTTGCGGTAAGAATGATTT TGAGTGTAGTTAATTGGAACACCCTTATGGTTTATCTATATAACACTGACAATTGTTGGCTTTCTTTCCAGGTTTCTCTT GTGGTTTTGTTTTCTTAGCGAGGCTTGTGAGAAACATGTGCAGGCTTCTCTAGAAGAATGGATATAGAAAGGAAAAAAAA GGCCATATTAATGTGCCATAGCTGATTGCATCAGTGAAAAAGTTATTAATGTAAATGGTTTTCTGGTTCATCTGGTTTGA CCTTGTGGTGCTCAGAAGATTACTACTATCTATAAGCTTCTGATGCATCGTTTTCGTAGAAAATGAGCAAATTCTGTTAT TTGTCAGTGAATCGTTTAATTTTCTGTAGTATCTACCGTGATACAGTTCTCCTGCATTATCAAAGAGAATTCAATAATCC TCTCATGAAATCAAT
CDS sequence (LotjaGi3g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCACGGTTGAAGAACAAGAAGATGTTGAGTACGACAGTGATCCGGAAGAGGCAAAGAGATCGCTGTCAATGCG GAGGCGTGAGGCTAGTGATGATGAAGAAGGCGAAGGCAGAGATAAGAGGGAAGAACAAGAAGAAGAAGAAGATCGTCGTG TTGGGATTCTTTCTGATGATGATTCTGATGGCGAGGGCGGTGTTGCTGACTATGATGACGGTGGTGATGAAATTGAAGAA GAAGAAGAAGAATTAGATGAAGAGGAGGAGGAGGTGGTGGTGTTTGATGAAGTTGAACAAGAGGTGTATGAGGAGCTGGG TGCAGCAAGTGGGGTTGAGGGTTCAGTGATTGTGGCTAAGGAATCTGATGGTGATATTGGACCCCCTTTGGAAGATTCTG CTGAGGTTGATACAGAGGAGAAAAAGGAGAATGAACCATTTGCTGTGCCCACTGCTGGAGCTTTTTACATGCACGATGAC CGTTTCAGGGACAATTCCGGTGCCGGCAACAGGCGGGTACATGGTGGTGGAAAGAGACTGTGGGAGTCCAAAGATGACAG GAAATGGGGACATGATAAATTTGAGGAAATTACTTTCCAGGAAAGGCACTACCAAGAGAGGAGGGGAGCTTCTAATTATC GAGGAGGCCGTGGTAATAACCGAGGCAGTGATCGTGGAGGACATATTCGAGGAAACAGGAGGGGATATAATGACAGTAGC CAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGGAGAGGGCCCCGAAGGTACGATCCTACCAATAGAAGCAGTGGTCCAGC TCCCCAAGTGCATAATAAACAATCTGGGAAGTCTTTTGAGAAAACTGCACCTGCTAGATCAGAGAGAACTTCAACATCCG CTTCCAATGCAGAATCTAACCCTGTGCCTGCTAGGAAACAAGTGTCGTCAGCTTCAAATTTGAATTATGCATCCCCGCCA TTTTACCCATCAGGCTCTTCCAACAAAGAGATCAATTTGGTACAAAATAAAAATGCACAAGTTGGAAGCAATAGCAAGAA CAATGCATTGCTTCAGGGAAAGAATCTTGTTGATTCCATCAACATAGACAAGGTGTACATTGATAAGTCCACCAGGCCAT CTGTTGGAAAGCCTTCGAACAATGTGCATATAACACCACCTGGATCTTCTGGAGTCAATGCATTCCATGCTTCTCTTCCC ATGGCTGCTGGGACTGGGAGGGGTGTAGCAATCCCCATACAGATGAACTATCAGCCTGCACCCTCACATAATCACGTAAA TAAAGTTTCTCCAGGGCAACTCCAGTCTGTTCAGAGAAGTTATGCACCAGGAAGGTCCTCAACATCTGTGCAAGCTACTG CCCAACAGTTGGGCCATCGACCTAGTAGTAGGTCTCAATCTTCATCTCCCCCGAAAACATCTGCGTCATTTAATTCACTT GATTCAGTAGATATGGACTCAGCATCAGAATCAGGTAAAACAAAAGGGGCTATGATTGGGAAGGGAAAGGGAGGTTCCCA GGGTACTGGACAGGGTTCTTTTGTTTATGGTGGGGCACAGGTAATGGGGGCTGCTGGAAATGGGGGTGTTAGTCATAGAG ATCCAAACTTCCCAGCCACTCCTACCTTCTTGCCAGTGATGCAATTCGGGGGCCAGCATCCTGGTGGTATGGGAGTTCCT GCTGTTGGCATGGCATTCCCTGGATATGTTGCTGGTTCAGGAAAATCTGAAATGACATGGTTACCAGTCTTGGCTGGCGC TGCAGGAGCTTTGGGGGCTTCATACCCATACCTTGCTGTTGATGGTGCTTACACTCGACAATCTGGACCGACCTCTGCAA TGGGTAATTCAAGCAAGGAACATAATGATGTTAATAAAGCTAACAATGAATTGAAGCCACCACAGAAATCTGAGCTTGTA AGTGATGAGTATGGACAACGGCAGAATAAGCCTCGAAGATACTCAGAGATGAACTTTGGTCAGTAA
Protein sequence (LotjaGi3g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSTVEEQEDVEYDSDPEEAKRSLSMRRREASDDEEGEGRDKREEQEEEEDRRVGILSDDDSDGEGGVADYDDGGDEIEE EEEELDEEEEEVVVFDEVEQEVYEELGAASGVEGSVIVAKESDGDIGPPLEDSAEVDTEEKKENEPFAVPTAGAFYMHDD RFRDNSGAGNRRVHGGGKRLWESKDDRKWGHDKFEEITFQERHYQERRGASNYRGGRGNNRGSDRGGHIRGNRRGYNDSS QNQVPKVVVKGRGPRRYDPTNRSSGPAPQVHNKQSGKSFEKTAPARSERTSTSASNAESNPVPARKQVSSASNLNYASPP FYPSGSSNKEINLVQNKNAQVGSNSKNNALLQGKNLVDSINIDKVYIDKSTRPSVGKPSNNVHITPPGSSGVNAFHASLP MAAGTGRGVAIPIQMNYQPAPSHNHVNKVSPGQLQSVQRSYAPGRSSTSVQATAQQLGHRPSSRSQSSSPPKTSASFNSL DSVDMDSASESGKTKGAMIGKGKGGSQGTGQGSFVYGGAQVMGAAGNGGVSHRDPNFPATPTFLPVMQFGGQHPGGMGVP AVGMAFPGYVAGSGKSEMTWLPVLAGAAGALGASYPYLAVDGAYTRQSGPTSAMGNSSKEHNDVNKANNELKPPQKSELV SDEYGQRQNKPRRYSEMNFGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 92 | 92 | - | – | |
PANTHER | 7 | 661 | 655 | 9.3E-250 | – | |
PANTHER | 7 | 661 | 655 | 9.3E-250 | – | |
MobiDBLite | 15 | 60 | 46 | - | – | |
MobiDBLite | 63 | 92 | 30 | - | – | |
Coils | 71 | 98 | 28 | - | – | |
SMART | 117 | 220 | 104 | 1.1E-19 | ||
MobiDBLite | 121 | 146 | 26 | - | – | |
Pfam | 132 | 214 | 83 | 3.5E-18 | ||
MobiDBLite | 160 | 187 | 28 | - | – | |
MobiDBLite | 200 | 310 | 111 | - | – | |
MobiDBLite | 262 | 310 | 49 | - | – | |
MobiDBLite | 370 | 389 | 20 | - | – | |
MobiDBLite | 373 | 389 | 17 | - | – | |
MobiDBLite | 421 | 489 | 69 | - | – | |
MobiDBLite | 421 | 507 | 87 | - | – | |
MobiDBLite | 607 | 661 | 55 | - | – | |
MobiDBLite | 607 | 635 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0361900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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