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LotjaGi3g1v0361900.1

Overview

Field Value
Gene ID LotjaGi3g1v0361900
Transcript ID LotjaGi3g1v0361900.1
Lotus japonicus genome version Gifu v1.2
Description CASC3/barentsz eIF4AIII-binding protein; TAIR: AT1G80000.1 CASC3/Barentsz eIF4AIII binding protein; Swiss-Prot: sp|A5D7H5|CASC3_BOVIN Protein CASC3; TrEMBL-Plants: tr|A0A072UG99|A0A072UG99_MEDTR CASC3/barentsz eIF4AIII-binding protein; Found in the gene: LotjaGi3g1v0361900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:74563152..74568366) extracted from Lotus japonicus Gifu genome v1.2.

ATAAACTTTGCTTAAATGAGTAAACTATATTGGATGATTGGATCCTGTGATAAACTAGATTGGATCGGCTCTTGAAATGA TAAACTAAAAAAAAAAAACTAGAACAGTTCGGTTATACTGATCATCACTGAGTGACTCATAAATCACCAGTTTAGGGTTT TCAGAGACCAACGAACTTGGATCCTAATACCCGCGCAATAACTCTATCCCCCTTTCAATTTCACCAGTTTAGGGTTTCTG TTGGATTCAATTTCTGTCTGTGGGTGTTGCTGCTATGGGTAGCACGGTTGAAGAACAAGAAGATGTTGAGTACGACAGTG ATCCGGAAGAGGCAAAGAGATCGCTGTCAATGCGGAGGCGTGAGGCTAGTGATGATGAAGAAGGCGAAGGCAGAGATAAG AGGGAAGAACAAGAAGAAGAAGAAGATCGTCGTGTTGGGATTCTTTCTGATGATGATTCTGATGGCGAGGGCGGTGTTGC TGACTATGATGACGGTGGTGATGAAATTGAAGAAGAAGAAGAAGAATTAGATGAAGAGGAGGAGGAGGTGGTGGTGTTTG ATGAAGTTGAACAAGAGGTGTATGAGGAGCTGGGTGCAGCAAGTGGGGTTGAGGGTTCAGTGATTGTGGCTAAGGAATCT GATGGTGATATTGGACCCCCTTTGGAAGATTCTGCTGAGGTTGATACAGAGGAGAAAAAGGAGAATGAACCATTTGCTGT GCCCACTGCTGGAGCTTTTTACATGCACGATGACCGTTTCAGGGACAATTCCGGTGCCGGCAACAGGTATTTTCATTGTG CCAATTATAACCTAGTGGAAACTCTCTGTACTGCATACCAAGTATATCCTAAAGTGTTATGTGGACTTGGGTTAACTTAG TTTTTTAGACTTGGTCGTAAAAATGCTTCATCTTTTATCAGGCGGGTACATGGTGGTGGAAAGAGACTGTGGGAGTCCAA AGATGACAGGAAATGGGGACATGATAAATTTGAGGAAATTACTTTCCAGGAAAGGCACTACCAAGAGGTATGGTCTTTAA ATTACTGTGTGGTCAAGCATGTTAGAAATATAGTATTCATGTGTCCTTTACCCAAGAGCTTAAGCTGTTGGGATAATTGG TTCTTGGCATGGTGCCCGAGTCTCTATGACTAAGTGGTCTAGAGTTTGATCCTTGTCGCCTCCAATTCTTCTAATAAGAA TTTGGATTTCAGCACATAGTAGGTAGGCATGTGCATTGTCCCCCGTTCGAACCCAAGTGGGCTCTTGCGTGAGGGGCGTG GTAGAAATATAATTGTTCATGTGTCCTTTACCCAATAGCTTAAGCTTTTGGGACAATTGGTTTATGACAAAGCATTCATT TTAGTTCAATTGCCTCTTTTTAGAGAAGATCTTCTCTTATGCTTTCTTTATAAAATTTAGAGGAGGGGAGCTTCTAATTA TCGAGGAGGCCGTGGTAATAACCGAGGCAGTGATCGTGGAGGACATATTCGAGGAAACAGGAGGGGATATAATGACAGTA GCCAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGGAGAGGGCCCCGAAGGTACGATCCTACCAATAGAAGCAGTGGTCCA GCTCCCCAAGTGCATAATAAACAGTAAGTAGAGATTGCATTTTTTAAAATTTGCTCGATTCACCATACCTGTGGTGTCAA GACTTTCTGATAAATATTGTTTTGTTTTACAAGATCTGGGAAGTCTTTTGAGAAAACTGCACCTGCTAGATCAGAGAGAA CTTCAACATCCGCTTCCAATGCAGAATCTAACCCTGTGCCTGCTAGGAAACAAGTGTCGTCAGCTTCAAATTTGAATTAT GCATCCCCGCCATTTTACCCATCAGGCTCTTCCAACAAAGAGATCAATTTGGTACAAAATAAAAATGCACAAGTTGGAAG CAATAGCAAGAACAATGCATTGCTTCAGGGAAAGAATCTTGTTGATTCCATCAACATAGACAAGGTGTACATTGATAAGT CCACCAGGCCATCTGTTGGAAAGCCTTCGAACAATGTGCATATAACACCACCTGGATCTTCTGGAGTCAATGCATTCCAT GCTTCTCTTCCCATGGCTGCTGGGACTGGGAGGGGTGTAGCAATCCCCATACAGATGAACTATCAGCCTGCACCCTCACA TAATCACGTAAATAAAGTTTCTCCAGGGCAACTCCAGTCTGTTCAGAGAAGTTATGCACCAGGAAGGTCCTCAACATCTG TGCAAGCTACTGCCCAACAGTTGGGCCATCGACCTAGTAGTAGGTCTCAATCTTCATCTCCCCCGAAAACATCTGCGTCA TTTAATTCACTTGATTCAGTAGATATGGACTCAGCATCAGAATCAGGTAAAACAAAAGGGGCTATGATTGGGAAGGGAAA GGGAGGTTCCCAGGGTACTGGACAGGGTTCTTTTGTTTATGGTGGGGCACAGGTAATGGGGGCTGCTGGAAATGGGGGTG TTAGTCATAGAGATCCAAACTTCCCAGCCACTCCTACCTTCTTGCCAGGTTTGTGTCTACATTGCTTACTTTTTGGTAAT TTTGGATCTAATCTACTAGTACAACTTCTGATGTTCGAAAGCAATTTTCTCATTCCGAAGTGATTGGAGGCTGTAACAAT ACTTTCCTGTGGAAAATCAAGTAATCATATCTTTAACGTTAAGATGTGTACTTTGACATCCTAAAGGCTCTGATTTGTTA CCACCCTTTTTGTGTGTGTTTTGTAGAGTCCTTTCAGAACAAGACCAAGAATTATTTATTTCATTTTTCTTATTTTGTTA ATGAATTTTTCTAATTTTAATTGTCTTTGGTGGGATGCAGTGATGCAATTCGGGGGCCAGCATCCTGGTGGTATGGGAGT TCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTGGTTCAGGAAAATCTGAAATGACATGGTACAGATATAAATATC TTAGTTTACGAGTGTTGAATAATGTTTGAGGACTAGCCAATTGACTTGCTTTAGTGCCTTTGTCATGGTTGCAATCTCTT TCTCTCCCATTTTCTATAAAGAACTGTCAATACTGATGACATGAAATCATGATAATACAAGTACTTTGGAGAGCTTCATG TGAACACGCGTCACAAATATTTAATGAGTCTTTTTTAAGAAAGAAAAACTCGTGTTCCTCTTATTTCCCTTTATATTGGA AATATAATAATTACTTCTTACTCTGGTTTAGGTTACCAGTCTTGGCTGGCGCTGCAGGAGCTTTGGGGGCTTCATACCCA TACCTTGCTGTTGATGGTGCTTACACTCGACAATCTGGACCGACCTCTGCAATGGGTAATTCAAGGTTGGTCAAGTTTGA TAGCATTGACATGTATTTCATATTATCATAATTTTATCACCATTTCCTTTTCAATATTACTGTAGCCTTTGGCTTGGTTC TTGATTTTGTTTTGTTATTGAACCTTTGCAGCAAGGAACATAATGATGTTAATAAAGCTAACAATGAATTGAAGCCACCA CAGAAATCTGGTAAAATTGATATTCCATTTCCATTATCGTTTACCCATTCTTAGATACTAACATTATCATTTGTAACTTA TCTGTCTGTAGAGCTTGTAAGTGATGAGTATGGACAACGGCAGAATAAGCCTCGAAGGCAAGTTGGATTGCAAAACCCTC ATTTAATAGTTCAATTGTTATTTTGTTTGTGTATTTATTGCACTGCTTCTGCAGATCTGCTTTTACTGATGTTTTACTTT GGGGTATTTGAGAGGCTTATTGGGAAGCTGATGCAAATTTTGGTTATTATTGGCCAGATTGTGTATTAGATATATAATTT CTATAAATTTTGGTTATTGTCTATGCAGATACTCAGAGATGAACTTTGGTCAGTAAAGTTTTATATATGATGCAGCTTGT TTGAAATAAGCAGATAAAGGTTTGTTATTTTCCGAATTGAATTGGGGTATATTATTTTTGGTATTCCGATTTTTTATTTT TGGTAATTTTGTTATGCAGGCCTTCCTCCAGGCCCTTTGTTCTCCAGCTTTTGATCTGGAGCACTCTGGGCTGCTATAAG TTTGAAGATGTTTTAGGTAAGCGCCTTGCTATATAGTGCGAAAGCGAAACTCACGGTCATTTTTTGTTTCCAGTATATAT CACTTTCTGAAATATAATTGAAGGAGTTGCCTTTTTCTAATGGAACTAATCACCAATCAAATTAAGTTGAAATTGATTCT TGTGTTTTGTACCTGTAAGAATTAGTATTTCTCTTTAGGTAACTCTGAACCTATATTCTTCTAGAATGTATATCCTTAGA ATTCAGCTTATCCCAAAAATAATTCAGAGGTGAGGATTACCCTACCATTTGTAAGGATTTATTTAGCCATCTCTGGTCAA TGTGGGACATCAATCGTATACAATGTCTATCTTTTCTTTTATTGAGAGGAGTCCTCCTAAAGTTTATCCTTGAAATTCAC CATTCAATAGAACCAACGTTTCCCTAATGGGAAATGAGTTGAGTTGGGGATTGGAAATTTTTGATACAAATATCTGCTAA TATATCGTTTTTGGAAATGATAGAACTTGCCTGTTGAATTTTTAGGGTTTGCATACTCTTTTTGGTCTCAAATATTAGGA TGGTTTTCCTTGGACTCATACATCTGTTTCATTCTTCTCCCCCTTCCCCACTTTCCTGTTGCAGTTATATGATGCCTGCT CATGCTGTTCCCCATTTCAGAAGTTATTACAGATTGACGGGTGGTAGTTGCTTGTTTAGTTTTTGCGGTAAGAATGATTT TGAGTGTAGTTAATTGGAACACCCTTATGGTTTATCTATATAACACTGACAATTGTTGGCTTTCTTTCCAGGTTTCTCTT GTGGTTTTGTTTTCTTAGCGAGGCTTGTGAGAAACATGTGCAGGCTTCTCTAGAAGAATGGATATAGAAAGGAAAAAAAA GGCCATATTAATGTGCCATAGCTGATTGCATCAGTGAAAAAGTTATTAATGTAAATGGTTTTCTGGTTCATCTGGTTTGA CCTTGTGGTGCTCAGAAGATTACTACTATCTATAAGCTTCTGATGCATCGTTTTCGTAGAAAATGAGCAAATTCTGTTAT TTGTCAGTGAATCGTTTAATTTTCTGTAGTATCTACCGTGATACAGTTCTCCTGCATTATCAAAGAGAATTCAATAATCC TCTCATGAAATCAAT 

CDS sequence (LotjaGi3g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTAGCACGGTTGAAGAACAAGAAGATGTTGAGTACGACAGTGATCCGGAAGAGGCAAAGAGATCGCTGTCAATGCG GAGGCGTGAGGCTAGTGATGATGAAGAAGGCGAAGGCAGAGATAAGAGGGAAGAACAAGAAGAAGAAGAAGATCGTCGTG TTGGGATTCTTTCTGATGATGATTCTGATGGCGAGGGCGGTGTTGCTGACTATGATGACGGTGGTGATGAAATTGAAGAA GAAGAAGAAGAATTAGATGAAGAGGAGGAGGAGGTGGTGGTGTTTGATGAAGTTGAACAAGAGGTGTATGAGGAGCTGGG TGCAGCAAGTGGGGTTGAGGGTTCAGTGATTGTGGCTAAGGAATCTGATGGTGATATTGGACCCCCTTTGGAAGATTCTG CTGAGGTTGATACAGAGGAGAAAAAGGAGAATGAACCATTTGCTGTGCCCACTGCTGGAGCTTTTTACATGCACGATGAC CGTTTCAGGGACAATTCCGGTGCCGGCAACAGGCGGGTACATGGTGGTGGAAAGAGACTGTGGGAGTCCAAAGATGACAG GAAATGGGGACATGATAAATTTGAGGAAATTACTTTCCAGGAAAGGCACTACCAAGAGAGGAGGGGAGCTTCTAATTATC GAGGAGGCCGTGGTAATAACCGAGGCAGTGATCGTGGAGGACATATTCGAGGAAACAGGAGGGGATATAATGACAGTAGC CAAAATCAGGTGCCTAAGGTTGTTGTGAAAGGGAGAGGGCCCCGAAGGTACGATCCTACCAATAGAAGCAGTGGTCCAGC TCCCCAAGTGCATAATAAACAATCTGGGAAGTCTTTTGAGAAAACTGCACCTGCTAGATCAGAGAGAACTTCAACATCCG CTTCCAATGCAGAATCTAACCCTGTGCCTGCTAGGAAACAAGTGTCGTCAGCTTCAAATTTGAATTATGCATCCCCGCCA TTTTACCCATCAGGCTCTTCCAACAAAGAGATCAATTTGGTACAAAATAAAAATGCACAAGTTGGAAGCAATAGCAAGAA CAATGCATTGCTTCAGGGAAAGAATCTTGTTGATTCCATCAACATAGACAAGGTGTACATTGATAAGTCCACCAGGCCAT CTGTTGGAAAGCCTTCGAACAATGTGCATATAACACCACCTGGATCTTCTGGAGTCAATGCATTCCATGCTTCTCTTCCC ATGGCTGCTGGGACTGGGAGGGGTGTAGCAATCCCCATACAGATGAACTATCAGCCTGCACCCTCACATAATCACGTAAA TAAAGTTTCTCCAGGGCAACTCCAGTCTGTTCAGAGAAGTTATGCACCAGGAAGGTCCTCAACATCTGTGCAAGCTACTG CCCAACAGTTGGGCCATCGACCTAGTAGTAGGTCTCAATCTTCATCTCCCCCGAAAACATCTGCGTCATTTAATTCACTT GATTCAGTAGATATGGACTCAGCATCAGAATCAGGTAAAACAAAAGGGGCTATGATTGGGAAGGGAAAGGGAGGTTCCCA GGGTACTGGACAGGGTTCTTTTGTTTATGGTGGGGCACAGGTAATGGGGGCTGCTGGAAATGGGGGTGTTAGTCATAGAG ATCCAAACTTCCCAGCCACTCCTACCTTCTTGCCAGTGATGCAATTCGGGGGCCAGCATCCTGGTGGTATGGGAGTTCCT GCTGTTGGCATGGCATTCCCTGGATATGTTGCTGGTTCAGGAAAATCTGAAATGACATGGTTACCAGTCTTGGCTGGCGC TGCAGGAGCTTTGGGGGCTTCATACCCATACCTTGCTGTTGATGGTGCTTACACTCGACAATCTGGACCGACCTCTGCAA TGGGTAATTCAAGCAAGGAACATAATGATGTTAATAAAGCTAACAATGAATTGAAGCCACCACAGAAATCTGAGCTTGTA AGTGATGAGTATGGACAACGGCAGAATAAGCCTCGAAGATACTCAGAGATGAACTTTGGTCAGTAA 

Protein sequence (LotjaGi3g1v0361900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSTVEEQEDVEYDSDPEEAKRSLSMRRREASDDEEGEGRDKREEQEEEEDRRVGILSDDDSDGEGGVADYDDGGDEIEE EEEELDEEEEEVVVFDEVEQEVYEELGAASGVEGSVIVAKESDGDIGPPLEDSAEVDTEEKKENEPFAVPTAGAFYMHDD RFRDNSGAGNRRVHGGGKRLWESKDDRKWGHDKFEEITFQERHYQERRGASNYRGGRGNNRGSDRGGHIRGNRRGYNDSS QNQVPKVVVKGRGPRRYDPTNRSSGPAPQVHNKQSGKSFEKTAPARSERTSTSASNAESNPVPARKQVSSASNLNYASPP FYPSGSSNKEINLVQNKNAQVGSNSKNNALLQGKNLVDSINIDKVYIDKSTRPSVGKPSNNVHITPPGSSGVNAFHASLP MAAGTGRGVAIPIQMNYQPAPSHNHVNKVSPGQLQSVQRSYAPGRSSTSVQATAQQLGHRPSSRSQSSSPPKTSASFNSL DSVDMDSASESGKTKGAMIGKGKGGSQGTGQGSFVYGGAQVMGAAGNGGVSHRDPNFPATPTFLPVMQFGGQHPGGMGVP AVGMAFPGYVAGSGKSEMTWLPVLAGAAGALGASYPYLAVDGAYTRQSGPTSAMGNSSKEHNDVNKANNELKPPQKSELV SDEYGQRQNKPRRYSEMNFGQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 92 92 -
PANTHER 7 661 655 9.3E-250
PANTHER 7 661 655 9.3E-250
MobiDBLite 15 60 46 -
MobiDBLite 63 92 30 -
Coils 71 98 28 -
SMART 117 220 104 1.1E-19
MobiDBLite 121 146 26 -
Pfam 132 214 83 3.5E-18
MobiDBLite 160 187 28 -
MobiDBLite 200 310 111 -
MobiDBLite 262 310 49 -
MobiDBLite 370 389 20 -
MobiDBLite 373 389 17 -
MobiDBLite 421 489 69 -
MobiDBLite 421 507 87 -
MobiDBLite 607 661 55 -
MobiDBLite 607 635 29 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0361900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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