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IPR019080 is a YqaJ viral recombinase.
<p>Proteins containing this domain are found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit [[cite:PUB00044555]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Restriction endonuclease [Theobroma cacao] gi|508708917|gb|EOY00814.1| | 8 | ||
| – | DNA-directed RNA polymerase subunit beta' [Theobroma cacao] gi|508718325|gb|EOY10222.1| | 8 | ||
| – | Type II-like restriction endonuclease, putative; TAIR: AT1G67660.2 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|Q5UQV1|YR354_MIMIV Uncharacterized protein R354; TrEMBL-Plants: tr|A0A151SDV5|A0A151SDV5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0363500 | 9 | ||
| – | Restriction endonuclease, type II-like protein; TAIR: AT1G13810.1 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|P45907|YQAJ_BACSU Uncharacterized protein YqaJ; TrEMBL-Plants: tr|A0A0B2S6R4|A0A0B2S6R4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0246400 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TIGR03033 | TIGRFAM | 1 | 25.00 |