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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0246400 |
| Transcript ID | LotjaGi6g1v0246400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Restriction endonuclease, type II-like protein; TAIR: AT1G13810.1 Restriction endonuclease, type II-like superfamily protein; Swiss-Prot: sp|P45907|YQAJ_BACSU Uncharacterized protein YqaJ; TrEMBL-Plants: tr|A0A0B2S6R4|A0A0B2S6R4_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0246400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55864895..55869090) extracted from Lotus japonicus Gifu genome v1.2.
GGTTATTTTAGTAAAATTGAAAATTATTTCTCTCAATTCAATACTAGCCCTTCATTTCATTGTATCGCTCTGAAACTAGT CACTCCTTACACACGAGGGTTGTTTCGTTCTACCACCGTCGCCATTCCATTCACCTCTTCCCGTTTCTCTGCCGTGGCTG AAACCAACGCCGGAGGAACCCTCAACTCTGCTGCAACGGTCTTCCTTCCGGTGATCAGCGCTTCCGTTTTCAGAAGAAGT AAGGATTGCAAGCTCGTTTAGCTTCACTGCAACACCAAACTGTATCGTTGATTCTCACTCACAATCACTCATACTTTGAG TTTCATTGCACAAATTTTGAACTATTGAACTGAAGGAGATAACAAATTGGTACCCGCAACTTTGAGCTGAAGCTTCAGGT AAACAAAATTCTTAGCTAATTTTTTTTTATTCTTCCTATATGTGATTGAGACTGAGAAATTTAGGTGCTGTCTGTGTGTT GGTTTTTCTCTGCAATGTAGTAGCTCTCGGCCTCGAATCCCTATGGAACTCGAGGGCTTCGCCGAGGTCATTGTGGCCGC ACATCCCTCATATGTAGCGGGTGGAAGAAGCAATTAAGAAAAAAAAGCTTGCAATGCCCTTTTGTTTGAGGTAAATTATC TTGTGCATTCTCATAGAACTTTCTTTCTTTTGATTCTGAATTTATCTTCTAATATATGAAGAAAATTTTCATATATTGGC AGTGTAAACCGAAGCTGTGAAAATGACTAAGCTAAAACTAGTTTTAGAGTTGGTTTAAAGCTGGTTGAAACCTGTTCTAG GACCAGTTTAGAATTGGTTTTTGTTCTACATCCGTTTCAGAGATGATATTATTAATGTAGGCAAGCTTTAAGATTTGTTG ATAGGGTAAACTTGTTCTATCCCATCATATGAAATATGCTCAATACTGTTTAAACAAGTTTAATAACTGGTTTGGAGCTG CTAAACAGTTACAAAACCAGTGTTAGAACTGGTTTAAAATGGGTTCATAGAAGTAGTTTTACTTTGGTTTGGTTAGGTTT TTAAAAAAATCCAAACCATGCACACCCCAGTGAACTGTTGAGAACTAGTTATCTGCTAACAAATCTAATATGAAAAAGAA ACACCATATACTTGTTCAATGTCCATGATAATCTAGAGTATTGTTCTTTTAATTGTTGTCTACGTGCTTTGCTAATATTC TATTGTTGCCTCTTCTTCAACAGTGGTGAAATTGCACCTTCGTTATCTGTTGTTTGTCTGCAATGTTTCTTGCGCAGAAG TGGACTTGTTGGGTGTCTAGGTCATAAGAGAAACTTTCGTAGCAACACCAGTATGCATGCTTCTAATAACCCCTCTAGAA GATCCGGCTCTGTTGACAGTTTGTTGAAATACACGTCCAGCGAAACTTATCCGGTCCTTCAGGCTTCCAGCCTGCAACAC TGGTTTAAAAACTGGCAAGAACTTAGGAAATACAAACTGACAGCTAGTACTTTTGCTGGTGCTATTGGATTTTGGCCGCG GCGAAGGGTTCAGCTGTGGCTAGAGAAGATTGGTGCTATTGAACCATTCCATGGAAACCTTGCCACCTGTTGGAGCAATA TCAAAGAGGAGGAAGCACTTGAAAGATACAAACTCATAACTGGAAATACCGTGCTGTTTCCGGAATTTCAGGTCTATAGT GTAAAACCAGAGGACGATTGGCTTGCTGCTTCACCGGATGGTGTAGTGGTGTATGAGTTGCCTTCTTCTGGAGTCCTAGA GATAAAGTGTCCATATTTTAATGGCGACAAGAACAAAGCTTTCCCTTGGTCTCGAATTCCACTTTACTGTATTCCTCAAG CTCAGGGTTTAATGGAAATTCTAGGAACGGATTGGATGGATTTTTATGTTTGGACGCTTAATGGTAGTAGTCTATTCAGG TTATATCGTGATGCAGAGTATTGGGATGTAATGAAAACAGCACTATCTGATTTCTGGTTGAATCATGTCCTACCAGCCAG AGAGTTGTATAGTAGTAATGTCATAACAGATCCCCTTTATCAATTACGATCACTAAGACCAGCTCCGAGACATGAATTAT GTAGTTATATTGTTTATAAAAGCAAACATATCGTTGATAATTCAAAGTTGTTGATGAGGGAGATTAATGGGAAACTGCAA AATTGATACCTGCAGCTGTTAGAGGAGAATCATTAACAAGTTCTTTATTATAGATACTATGACATTTGAGTGGTTAGATT GAATCAATATAGTTTGTGGAGATATTGATTTTGCTTAAGGCTCTGTTTGTGAGTCCTATTTTGAGGGGGAAGGAGGGGAA CGGAAGGGAGAGGCTTCCAACAAGCCCTCCCCTTGTTTCTGAGTTTTTAAAATTGGGGGGAAGGGGTTTGGGGTATTTTT AAAACCCTCCTTCAGACACATTTTGAAGTTCCCCCAATTTGGGGGTTAAACCTGCGAAATGACATTTTTGCCTCACAATA CGTTAAAATAATTCATTTCATTATCATTTTCTTCTGGATCGGTTCTCAGCTGAGAAACCCTTGAAGAGCTTTGTATCTCC TCCTAGCCCTCTCTCAAAACCTGTCTTCTTCATCAACAAGGTATGCGATTTCTGTTGATTCTTCTAGAATCTCTACATTG ATTTGTGATTCCTTCTCTTTCCTTAGCATATACGCTTGTCTTGTGCTCTATGGAAGTGACTGTGAGTCAGTGATTTGAGT GATGTTTTTATTTGCAGTGTTCTGGCAGCCTTGGTGAAGAACAAAGTTGTGCCTGATCCTTTTTGGAGCCTTGGAAATGA GGCAATCTTAGATATTGCCGACTCTGGAAGAGACTATTACACTTTCTGATTCTTTACTACCTTTCACTGAAAGCTGGTAG GTTAGGAATTCTGCTCTGCTCTCTCTTATTATACCATTTTAGATTGATTAACTGGTCTTCAGTGCTGTGTGCACCTGTTC CCCTCTTCTCGCTTAAATATCGCCGTATAATGTTGCTCTTTTTATTACGGATTTCTTTTTATCTCGAAATTTAGCTATAT GTTAATTTTAGTTGAGCCAAATTGAAATGTGATGCTTTGAAGTGAGTTTATGGACTTGGTTTTCAACCCAAATAGCATTC AGTGCTTTATAAAGTTCAAGAGTTTGCTTTGAACTTGTTTGTTGCAGATTTTGAGGTTGAATTCTTTCTTTGTCCACTTC TGGTTGATCAGAGCTATTGTATAGAGATAATTTCCAGTGAAATGTTAGATGATGAGGAAATCTATGTTAGCTTCCAACCT ATGTAATGTACTAAACTTGTTTGATTAGTCAGCTGAACGTGTTCTTGTATGAATGATCAGGTATGATGCTTTCTAGTTCT CACTTGTCACTAGTTATTTATTTATTTGATTGCCATATAATGCTCATGATGCTTTCTAGTTCTCACTTGTCACTAGTTAT TTATTTATTTGATTGCCATATAATGCTCATTCATTTGTAGTTACTTTGCTATTTGTAATAACAGAACTTAGCAGGTACTT TTCATATGAACCTGTTAATGCTGAAGTGCTTCTTTGTAAATGCTTGACTACAGTTTCCTAATAATGCTCCTGGAATGTTT ATAATAGCTCTGAAGCCTTCAAAAGATTCATCTTACAATTTTGAAATTGGGTGGGGGTAAAGGGAGTCGTCATTGTTTGG TGGTATGTAAAAGGATAGTCGTATTGGGAAATTGCAAGTTTTTGTTTATGTTATTGAACTTAGGGCATTCAACATTGGCC TAATCTCCCATGTTGCAGTTTTTTTTTTCTTTCTTTTTTAATTTAGTTTATCCATATAGATCTCCTAAAGTTCTCTATTC CTTAGTCCTGTTTTTTGTTTATTACATGAATGCACAAAGTAAATAGGTCGAACACAAAACAATGCTCATTCATTTGTAGT TAACATAATGGTCTAGTTAGCTATGTAGTTTGTTTTGGATATCACTTGTGTTAACATAAAACACATTCATTTCAATTTAT GAGAAAAGTTTCGTTCACTTTTTACCTCGTAGTGAGTATTAATGCTCGTTAGCATCAGGTATTCAAATATACCACTACTA TAAAATTGGTGCTTCGACTTTGGATCAAAGAGGCTTTTCCTATAGGGTTTTAATTCATTCACACCCAACTTTCTATTTCA TTTCATTTTCACTTACTTTCTTTTCTTATGTCTCTT
CDS sequence (LotjaGi6g1v0246400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCTTTTGTTTGAGTGGTGAAATTGCACCTTCGTTATCTGTTGTTTGTCTGCAATGTTTCTTGCGCAGAAGTGGACT TGTTGGGTGTCTAGGTCATAAGAGAAACTTTCGTAGCAACACCAGTATGCATGCTTCTAATAACCCCTCTAGAAGATCCG GCTCTGTTGACAGTTTGTTGAAATACACGTCCAGCGAAACTTATCCGGTCCTTCAGGCTTCCAGCCTGCAACACTGGTTT AAAAACTGGCAAGAACTTAGGAAATACAAACTGACAGCTAGTACTTTTGCTGGTGCTATTGGATTTTGGCCGCGGCGAAG GGTTCAGCTGTGGCTAGAGAAGATTGGTGCTATTGAACCATTCCATGGAAACCTTGCCACCTGTTGGAGCAATATCAAAG AGGAGGAAGCACTTGAAAGATACAAACTCATAACTGGAAATACCGTGCTGTTTCCGGAATTTCAGGTCTATAGTGTAAAA CCAGAGGACGATTGGCTTGCTGCTTCACCGGATGGTGTAGTGGTGTATGAGTTGCCTTCTTCTGGAGTCCTAGAGATAAA GTGTCCATATTTTAATGGCGACAAGAACAAAGCTTTCCCTTGGTCTCGAATTCCACTTTACTGTATTCCTCAAGCTCAGG GTTTAATGGAAATTCTAGGAACGGATTGGATGGATTTTTATGTTTGGACGCTTAATGGTAGTAGTCTATTCAGGTTATAT CGTGATGCAGAGTATTGGGATGTAATGAAAACAGCACTATCTGATTTCTGGTTGAATCATGTCCTACCAGCCAGAGAGTT GTATAGTAGTAATGTCATAACAGATCCCCTTTATCAATTACGATCACTAAGACCAGCTCCGAGACATGAATTATGTAGTT ATATTGTTTATAAAAGCAAACATATCGTTGATAATTCAAAGTTGTTGATGAGGGAGATTAATGGGAAACTGCAAAATTGA
Protein sequence (LotjaGi6g1v0246400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFCLSGEIAPSLSVVCLQCFLRRSGLVGCLGHKRNFRSNTSMHASNNPSRRSGSVDSLLKYTSSETYPVLQASSLQHWF KNWQELRKYKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFHGNLATCWSNIKEEEALERYKLITGNTVLFPEFQVYSVK PEDDWLAASPDGVVVYELPSSGVLEIKCPYFNGDKNKAFPWSRIPLYCIPQAQGLMEILGTDWMDFYVWTLNGSSLFRLY RDAEYWDVMKTALSDFWLNHVLPARELYSSNVITDPLYQLRSLRPAPRHELCSYIVYKSKHIVDNSKLLMREINGKLQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 314 | 271 | 3.4E-136 | – | |
| PANTHER | 44 | 314 | 271 | 3.4E-136 | – | |
| SUPERFAMILY | 68 | 268 | 201 | 5.9E-40 | ||
| Gene3D | 80 | 269 | 190 | 7.5E-44 | ||
| TIGRFAM | 81 | 230 | 150 | 3.3E-20 | ||
| Pfam | 83 | 220 | 138 | 5.2E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0246400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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