Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0528600 |
Transcript ID | LotjaGi3g1v0528600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Photosystem II stability/assembly factor HCF136; TAIR: AT5G23120.2 photosystem II stability/assembly factor, chloroplast (HCF136); Swiss-Prot: sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic; TrEMBL-Plants: tr|G7JPH8|G7JPH8_MEDTR Photosystem II stability/assembly factor HCF136; Found in the gene: LotjaGi3g1v0528600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94540059..94544115) extracted from Lotus japonicus Gifu genome v1.2.
CGCGAAGTCGTTGAGATAAGGCAGATAGAAAGAAGAAGAAGCATCTGGTTCCATCTTCCACTCTCCAATGGCGACTCTGC AATTCACCTTCACTGACCCAACCACGTTATGGAGGCCATCTCTCCCTTCTTCTTCTAGAACTTCCCATTCTCGCAACCGC ACCAGCTTCGTCGTCAAAGCTTCTTTCGACATTTCCAGAACCAGGAGACAGCTCCTCGCCGACACCGCAGCATTATCTCT GCTACTCCCTTCTCTGCCGGCGAGGTCCGACGAGGCGCTCGCTGAGTGGGAGAGAGTTTACCTCCCTATCGACCCTGGCG TCGTGCTTCTCGACATTGCTTTCGTCCCTGAGGATCCCAACCATGGTAAGGGTACTTGCCATTTCACTTCAAATCTTGTT TTTTCAGCTTTGAATTGCATTTCAATGGTGGGTTTGGTAGGTTTTCTTCTGGGTACGAGGCAAACCCTTTTGGAGACTAA AGATGGAGGAAACACTTGGGGTCCACGATCTATACCCTCTGCAGAGGATGAAGATTTCAACTACAGGTTTAATTCCATCA GCTTCAGAGGGAAGGAAGGGTGGATAGTGGGGAAACCTAATATTCTGCTCTACACTTCTGATGCTGGAGAAAGTTGGGGA AGGATACCACTCAGTGCTCAACTTCCTGGTGATATGGTATGGATTTTGTGCAATGCTTCTTGTTTCTATTTCTCATTCAT TCAAGTCTTGTGTATCGAATAAGTATTTCTTTGATGATCTCTTTGCATCACTCGCACTTATTGATTGAGTTGAAAATCCA TTTATGTTGCTGATATAATGCAAACATACTGGAGTAATTGTCACGTTCTTTTGATATTAAAACTGCAGGTGTACATAAAG GCAACTGGGGATAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATCTATGTTACATCAAATAGAGGCTACAACTGGAA GGCTGCTGTTCAGGAAACGGTGTCAGCTACTCTCAACAGGTGAGTTTCTGATAGTCAGCAAGCTAAACTTCATTTCGTTA AACCAGCCAAGAATGCATTGTGTAACTATGTATCCTATGTATTAATAGTGTAATGCTTTTTAAGGATTGTGCGCCCTCTT TGAAATTATCATGTGAAACATTTGACAAATTTGAAATGTTAAAGTTTTCTTGAAGAGCTTAATTTGTACGATGGTTTTGC GATGTTCCTGTTAGTTACCTAATTCAACTTCTTATTCATATGCTCCAAAAACTCATTTATTGTGTCATCTGTCGCATTAT CTAGCCCTACGACCAATCAGTTAACAGCCGACCACTTTATCCATTTAGATTAGACATTTATTTATGTATGTTGCCTCTTC AGAACAGTTTCTAGTGGCATTAGCGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGCTCTCCAGATGGAAA TTATGTCGCTGTATCAAGTCGTGGTAACTTCTACTTAACCTGGGAGCCTGGTCAGGTGAGGCTTTTATTACTTACACTTT TGGTGCAAGCCTGCTCTGGCATTTAAATTATGCTTAAGCTTTCAACTAAAATGAAATCATTAATGTGGAAATCTGAAACA GCTTGATAGAACACTTGGGCCTAATACCTATAATTACCCATTATAAAAGCATCTGTTAGAAGGCCCAGCACATGGAAAGT CTATACTAGGAGGAGAGTGGGGTCAGGAGGGGAGAATGCTAGCAAATTAGTGACGTGTCCCTAGATTCCAGGGAATTCTG ATCTTTTGGGAAGGGAGGCTAGATGGTGGGGTCATTCATTGGTTTGTTTGTGAATTCCATCAGGAGAGAATATCTCTCTG GTAGGAGTCTCTGACTCTGGTTCAGCAGACACTTCATTGTAGAGATCTTGAGCCCTCTTTTTTCTGTTAATAATATAGAG TTCCATTGTTCTGAGTTGCTGAGTCCTATCACAGCACGTGTAAACTGGTCAGGCAGAACAGATTATATGCAGCTACCAAA CTAGTGAAGAATTGTTGCTAAAATTGTAGTTGTGGACTTTTTAAATGTGCAGGAAAATATTCACATCATCCTTGTAAGTT GTAATATCATGGTTTGCCACATCGAAAATTATCCTAGGAACATTAACACCGGATCTTCCGGATGCGATCAACTAAAATAA ATTAACGTACTTATACTATAGTATGATGCATGGCCAAGAATTCTTGTACTCTCCACTGTAAAAGTGTTTCTTTCTTCTTT AATTATTTTCATTCAGCTGATGCAGTAGATAGGATAGACCTTATAGTAAATGATTCTACCAACCGACAAATTCAGAAGAG ATTCTCTGTTTTGCCTTTTGCACCACCATTGGTATTTGTACTTCCTCGATGCATCATGATTCAAAAAGTCATTGTAACAT TTTAGTTTTTCATTGGAATGTATATCTCCATAGTGGCCTGTATAGATTACAGTTTTTCATTTAGTCATCTGATATCATTT TGTTTGATGGTTTACCTGCACCAATAGTGCTTAATTATGATTGTTTTATTTACTTCTCAGGCATACTGGCAGCCACATAA CAGAGCAGTTGCCAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTCTTGTTCGCGGAGGTGGTC TTTATCTAAGCAAAGGCACAGGGGTATTGAATTCTGGGAATATCCTTCATAGTGAATCAATATGAGACTAGTAGTCTTCC TTTTCTCTCCTTCCAAGTTCCAAGTCAATCTGGATAATCTTATAACTCATTTCTCAAGTCTGAGATTTGCTATTAATTTT GTCACCTTTCTTCACTGGGAAACTTCCGTCTGTTTGTTCTTCATTAACAGATTCCTGTGCTTACCCTCCCTTATATTGTT TGTTAACAAGGCAACTTCTGTGTTTGTTCAAGCATCTTTCTTTCTTGCATTATCTTTCCTTGTTTGTCACATGTTTATAT TGGTATGCCTTTATCCACTAAATTTTTCACATTGATATGCCTCCTGTATCCACTAGATTCATCACATTGCTATGCTTGTA TCCACTACATTCTGCATTCCCAATTCAACCACCCCTAAGTGTTTTACTTCCTATAGAATTAGGGGAAAGTGGAAAAGGAC CAAGAGGGAAAACCTTTTCTAAGAAATTGCATAAAATGCTCGAAGTCAAACCATTTCGCTTCCATCGTTATTATACTTCA TCTAAAAATCTTAATACTGATCGGCTAATTTCTTTTTGGTCAATCATAACCGACTTTTTATGCTTTTTGCTTGCCATAGA TTTCTGCCTCGTTTTTTTTTTCTTTTTGAATTTCGTTGCTTACTCTGAGAATATTGTTTTTACCATTTCAGATAACTGAA GAATTTGAGGAGGTGCCTGTTCAAAGCCGGGGCTTTGGCATTCTTGATGTGGGGTATCGTTCAACGGTATAGTTTTCATG CATTCAGAGAGTTGCTTTATTAATTAACAAAGTCTTGCTTGTAACAGTCCTGTCACTTAATATTCTAAAGGAAATACAAC ATTCACATGATGATTATTGCTTCTTTACTCTTCAGTTCGTATATAATATGCTAAATTATGCATACAGGACGAGGCTTGGG CAGCAGGAGGAAGTGGTGTTCTGTTGAGAACTAATAATGGTGGCAAGTCATGGGTTCGTGACAAAGCTGCTGACAACATT GCTGCAAATTTATACTCTGTGAAGTCAGTCTAACTATTACTAGGCCCCACTTTTATATAATTACATTCATTTACTGGTGT GCATTTTAAAACCACAAATTTAGCTGTCTCCTGAACTAGACCAGGCTCAAGCTCCTCATGCTACTGGAATTCTACACTTA TATTGTTCCATCTATCTTTGTGATACTCATTTTCTTTTATGTTGTTAGAACAAGATGAAAACAAAACCCAGGAGATAAAA CAGCTATACAAGAGTTATGAAGTTTATAGATCTTGTATGGTTCTTCTTCTAAACACTCTACTTGCTGCAGGTTCATTGAT GACAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG
CDS sequence (LotjaGi3g1v0528600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCTGCAATTCACCTTCACTGACCCAACCACGTTATGGAGGCCATCTCTCCCTTCTTCTTCTAGAACTTCCCA TTCTCGCAACCGCACCAGCTTCGTCGTCAAAGCTTCTTTCGACATTTCCAGAACCAGGAGACAGCTCCTCGCCGACACCG CAGCATTATCTCTGCTACTCCCTTCTCTGCCGGCGAGGTCCGACGAGGCGCTCGCTGAGTGGGAGAGAGTTTACCTCCCT ATCGACCCTGGCGTCGTGCTTCTCGACATTGCTTTCGTCCCTGAGGATCCCAACCATGGTAAGGGTACTTGCCATTTCAC TTCAAATCTTGTTTTTTCAGCTTTGAATTGCATTTCAATGGTGGGTTTGGTAGGTTTTCTTCTGGGTACGAGGCAAACCC TTTTGGAGACTAAAGATGGAGGAAACACTTGGGGTCCACGATCTATACCCTCTGCAGAGGATGAAGATTTCAACTACAGG TTTAATTCCATCAGCTTCAGAGGGAAGGAAGGGTGGATAGTGGGGAAACCTAATATTCTGCTCTACACTTCTGATGCTGG AGAAAGTTGGGGAAGGATACCACTCAGTGCTCAACTTCCTGGTGATATGGTGTACATAAAGGCAACTGGGGATAAGAGTG CAGAGATGGTGACTGACGAAGGTGCAATCTATGTTACATCAAATAGAGGCTACAACTGGAAGGCTGCTGTTCAGGAAACG GTGTCAGCTACTCTCAACAGAACAGTTTCTAGTGGCATTAGCGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAA TCGCTCTCCAGATGGAAATTATGTCGCTGTATCAAGTCGTGGTAACTTCTACTTAACCTGGGAGCCTGGTCAGGCATACT GGCAGCCACATAACAGAGCAGTTGCCAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTCTTGTT CGCGGAGGTGGTCTTTATCTAAGCAAAGGCACAGGGATAACTGAAGAATTTGAGGAGGTGCCTGTTCAAAGCCGGGGCTT TGGCATTCTTGATGTGGGGTATCGTTCAACGGACGAGGCTTGGGCAGCAGGAGGAAGTGGTGTTCTGTTGAGAACTAATA ATGGTGGCAAGTCATGGGTTCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCTGTGAAGTTCATTGATGAC AAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG
Protein sequence (LotjaGi3g1v0528600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLQFTFTDPTTLWRPSLPSSSRTSHSRNRTSFVVKASFDISRTRRQLLADTAALSLLLPSLPARSDEALAEWERVYLP IDPGVVLLDIAFVPEDPNHGKGTCHFTSNLVFSALNCISMVGLVGFLLGTRQTLLETKDGGNTWGPRSIPSAEDEDFNYR FNSISFRGKEGWIVGKPNILLYTSDAGESWGRIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQET VSATLNRTVSSGISGASYYTGTFNTVNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLV RGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVRDKAADNIAANLYSVKFIDD KKGFVLGNDGVLLRYLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 27 | 100 | 74 | 1.3E-209 | – | |
PANTHER | 27 | 100 | 74 | 1.3E-209 | – | |
SUPERFAMILY | 124 | 416 | 293 | 4.71E-45 | – | |
PANTHER | 125 | 417 | 293 | 1.3E-209 | – | |
PANTHER | 125 | 417 | 293 | 1.3E-209 | – | |
Pfam | 125 | 415 | 291 | 1.2E-113 | ||
Gene3D | 156 | 401 | 246 | 1.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0528600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…