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IPR031101 is a RNA polymerase-associated protein Ctr9.
<p>This entry includes budding yeast RNA polymerase-associated protein Ctr9 and its homologues from other yeasts, animals and plants. The homologue in fission yeast is known as tetratricopeptide repeat protein 1 (Tpr1) [[cite:PUB00074851]].</p> <p>Budding yeast Ctr9 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1 [[cite:PUB00009800]]. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection [[cite:PUB00074568]]. Human Paf1 complex (Paf1C) consists of Paf1, Cdc73, Ctr9, Rtf1, Leo1 and Wdr61 (Ski8). As in yeast, the human Paf1C has a central role in co-transcriptional histone modifications [[cite:PUB00074570]].</p> <p>Arabidopsis Paf1C related proteins such as VIP4 (Leo1), VIP5 (Rtf1), ELF7 (Paf1), ELF8 (Ctr9) and ATXR7 (Set1) are required for the induction of seed dormancy. They control both germination and flowering time [[cite:PUB00074589]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] gi|356556372|ref|XP_003546500.1| | 17 | ||
| – | PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] gi|356556372|ref|XP_003546500.1| | 17 | ||
| – | RNA polymerase-associated protein CTR9 like; TAIR: AT2G06210.1 binding protein; Swiss-Prot: sp|B5X0I6|VIP6_ARATH Protein CTR9 homolog; TrEMBL-Plants: tr|I1MHE8|I1MHE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0225800 | 16 | ||
| – | RNA polymerase-associated protein CTR9 like; TAIR: AT2G06210.1 binding protein; Swiss-Prot: sp|B5X0I6|VIP6_ARATH Protein CTR9 homolog; TrEMBL-Plants: tr|A0A151QVK3|A0A151QVK3_CAJCA RNA polymerase-associated protein CTR9 isogeny; Found in the gene: LotjaGi6g1v0225800 | 15 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 25.00 |