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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0198579 |
| Transcript ID | Lj0g3v0198579.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] gi|356556372|ref|XP_003546500.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 478 | 478 | 0 | – | |
| PANTHER | 1 | 478 | 478 | 0 | ||
| Gene3D | 41 | 312 | 272 | 3.10E-33 | ||
| ProSiteProfiles | 113 | 782 | 670 | 49.683 | ||
| SUPERFAMILY | 115 | 249 | 135 | 1.63E-24 | ||
| ProSiteProfiles | 128 | 161 | 34 | 7.847 | ||
| SMART | 128 | 161 | 34 | 4.1 | ||
| ProSiteProfiles | 162 | 195 | 34 | 7.169 | ||
| SMART | 162 | 195 | 34 | 0.11 | ||
| Pfam | 166 | 228 | 63 | 4.00E-08 | – | |
| ProSiteProfiles | 197 | 230 | 34 | 11.948 | ||
| SMART | 197 | 230 | 34 | 3.80E-06 | ||
| SUPERFAMILY | 203 | 436 | 234 | 3.14E-28 | – | |
| ProSiteProfiles | 305 | 338 | 34 | 6.874 | ||
| SMART | 305 | 338 | 34 | 12 | ||
| Pfam | 306 | 333 | 28 | 1.60E-04 | ||
| Gene3D | 313 | 462 | 150 | 2.00E-29 | ||
| ProSiteProfiles | 342 | 375 | 34 | 12.066 | ||
| SMART | 342 | 375 | 34 | 5.60E-05 | ||
| Pfam | 353 | 413 | 61 | 2.70E-07 | – | |
| ProSiteProfiles | 376 | 409 | 34 | 10.089 | ||
| SMART | 376 | 409 | 34 | 0.035 | ||
| ProSiteProfiles | 448 | 481 | 34 | 6.667 | ||
| SMART | 448 | 488 | 41 | 170 | ||
| SUPERFAMILY | 449 | 477 | 29 | 3.22E-16 | ||
| Gene3D | 463 | 477 | 15 | 7.90E-15 | ||
| PANTHER | 506 | 1082 | 577 | 0 | – | |
| PANTHER | 506 | 1082 | 577 | 0 | ||
| Gene3D | 519 | 618 | 100 | 7.90E-15 | ||
| SUPERFAMILY | 520 | 628 | 109 | 3.22E-16 | ||
| SMART | 524 | 557 | 34 | 47 | ||
| ProSiteProfiles | 558 | 591 | 34 | 5.104 | ||
| SMART | 558 | 591 | 34 | 26 | ||
| SMART | 592 | 625 | 34 | 73 | ||
| SUPERFAMILY | 654 | 825 | 172 | 3.04E-16 | ||
| Gene3D | 655 | 727 | 73 | 2.00E-09 | ||
| SUPERFAMILY | 657 | 703 | 47 | 3.22E-16 | ||
| ProSiteProfiles | 713 | 746 | 34 | 8.172 | ||
| SMART | 713 | 746 | 34 | 2.00E-04 | ||
| Pfam | 718 | 782 | 65 | 5.40E-04 | – | |
| Gene3D | 728 | 795 | 68 | 3.50E-11 | ||
| SMART | 749 | 782 | 34 | 0.17 | ||
| ProSiteProfiles | 749 | 782 | 34 | 7.995 | ||
| Coils | 801 | 821 | 21 | – | – | |
| Coils | 855 | 922 | 68 | – | – | |
| MobiDBLite | 893 | 1082 | 190 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. |
Expression pattern of Lj0g3v0198579.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0198579.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.