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IPR033871

Source: InterPro

Description

IPR033871 is a Sm-like protein LSm5.

<p>The eukaryotic like-Sm (LSm) proteins assemble into a hetero-heptameric rings (LSm2-8 or LSm1-7) around a wide spectrum of RNAs. The LSm2-8 ring functions during general RNA maturation in the nucleus, while the LSm1-7 ring functions during mRNA degradation in the cytoplasm [[cite:PUB00063027], [cite:PUB00016606]]. LSm2-8 form the core of the U6 snRNP particle that, in turn, assembles with other components to form the spliceosome which is responsible for the excision of introns and the ligation of exons [[cite:PUB00059220], [cite:PUB00073458]]. The LSm1-7 ring is involved in recognition of the 3' uridylation tag and recruitment of the decapping machinery [[cite:PUB00081014], [cite:PUB00081010]].</p> <p>Members of the LSm family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel β-sheet [[cite:PUB00081012]].</p> <p>This entry represents LSm5.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj4g3v0281060.1
– PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis sativus] gi|449468622|ref|XP_004152020.1|
Domains
9
LotjaGi4g1v0025100.1
– Small nuclear ribonucleoprotein family protein; TAIR: AT5G48870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9FKB0|LSM5_ARATH Sm-like protein LSM5; TrEMBL-Plants: tr|A0A0A0L923|A0A0A0L923_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0025100
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd01732 CDD 1 50.00