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IPR034014

Source: InterPro

Description

IPR034014 is a Pol III subunit C11, C-terminal zinc ribbon.

<p>The C-terminal zinc ribbon domain of subunit C11 in RNA polymerase (Pol) III (RPC11) is required for intrinsic transcript cleavage. RPC11 is also involved in Pol III termination [[cite:PUB00082176]]. Eukaryote genomes are transcribed by three nuclear RNA polymerases (Pol I, II and III) that share some subunits. RPC11 is homologous to RPB9 of Pol II and RPA12 of Pol I. RPC11 C-terminal zinc ribbon is homologous to Pol II elongation factor TFIIS domain III [[cite:PUB00056396], [cite:PUB00082177]]. RPC11 has two zinc-binding domains separated by a flexible linker [[cite:PUB00082176]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0042779
Biological process TRNA 3'-trailer cleavage Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both.
Subterm of
Part of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj1g3v5038210.2
– PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis sativus] gi|449446776|ref|XP_004141147.1|
Domains
18
LotjaGi1g1v0794700.1
– DNA-directed RNA polymerase subunit; TAIR: AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal; Swiss-Prot: sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10; TrEMBL-Plants: tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0794700
Domains
17

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd10509 CDD 1 50.00